Related papers: Acyclic, connected and tree sets
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
We investigate inflection structure of a synthetic language using Latin as an example. We construct a bipartite graph in which one group of vertices correspond to dictionary headwords and the other group to inflected forms encountered in a…
Let $G$ be a finite, non-abelian group of the form $G = A N$, where $A \leq G$ is abelian, and $N \trianglelefteq G$ is cyclic. We prove that the commuting graph $\Gamma(G)$ of $G$ is either a connected graph of diameter at most four, or…
Cycle prefix digraphs have been proposed as an efficient model of symmetric interconnection networks for parallel architecture. It has been discovered that the cycle prefix networks have many attractive communication properties. In this…
Recent investigations in computational biology have focused on a family of 2-colored digraphs, called 2-colored best match graphs, which naturally arise from rooted phylogenetic trees. Actually the defining properties of such graphs are…
This paper aims at justifying LWF and AMP chain graphs by showing that they do not represent arbitrary independence models. Specifically, we show that every chain graph is inclusion optimal wrt the intersection of the independence models…
For every finitely generated free group we construct an explicit left order extending the lexicographic order on the free monoid generated by the positive letters. The order is defined by a left, free action on the orbit of 0 of a free…
It is known that many networks modeling real-life complex systems are small-word (large local clustering and small diameter) and scale-free (power law of the degree distribution), and very often they are also hierarchical. Although most of…
Let $(G,w)$ be an undirected weighted graph. The group inverse of $(G,w)$ is the weighted graph with the adjacency matrix $A^{\#}$, where $A$ is the adjacency matrix of $(G,w)$. We study the group inverse of singular weighted trees. It is…
A cross-bifix-free code is a set of words in which no prefix of any length of any word is the suffix of any word in the set. Cross-bifix-free codes arise in the study of distributed sequences for frame synchronization. We provide a new…
The definition of graph automatic groups by Kharlampovich, Khoussainov and Miasnikov and its extension to C-graph automatic by Murray Elder and the first author raise the question of whether Thompson's group F is graph automatic. We define…
This work is a contribution to the study of set of the representations of integers in a rational base number system. This prefix-closed subset of the free monoid is naturally represented as a highly non regular tree whose nodes are the…
The theory of complex trees is introduced as a new approach to study a broad class of self-similar sets. Systems of equations encoded by complex trees tip-to-tip equivalence relations are used to obtain one-parameter families of connected…
Let $G$ be the Cartesian product of a regular tree $T$ and a finite connected transitive graph $H$. It is shown in arXiv:2006.06387 that the Free Uniform Spanning Forest ($\mathsf{FSF}$) of this graph may not be connected, but the…
Various feature descriptions are being employed in logic programming languages and constrained-based grammar formalisms. The common notational primitive of these descriptions are functional attributes called features. The descriptions…
A bidimensional bifix (in short bibifix) of a square matrix T is a square submatrix of T which occurs in the top-left and bottom-right corners of T. This allows us to extend the definition of bifix-free words and cross-bifix-free set of…
We study the enumeration of spinal tree-child phylogenetic networks, a rigid family of tree-child networks in which all internal vertices lie on a single root--to--leaf path. We provide two complementary combinatorial frameworks. First, we…
We consider finite trees with edges labeled by letters on a finite alphabet $\varSigma$. Each pair of nodes defines a unique labeled path whose trace is a word of the free monoid $\varSigma^*$. The set of all such words defines the language…
A graph $G = (V, E)$ is word-representable if there exists a word $w$ over the alphabet $V$ such that, for any two distinct vertices $x, y \in V$, $xy \in E$ if and only if $x$ and $y$ alternate in $w$. Two letters $x$ and $y$ are said to…
We explore from an algebraic viewpoint the properties of the tree languages definable with a first-order formula involving the ancestor predicate, using the description of these languages as those recognized by iterated block products of…