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A major challenge in Atomic Force Microscopy (AFM) is to reduce the scan duration while retaining the image quality. Conventionally, the scan rate is restricted to a sufficiently small value in order to ensure a desirable image quality as…

Signal Processing · Electrical Eng. & Systems 2019-02-13 Kaixiang Wang , Michael G. Ruppert , Chris Manzie , Dragan Nesic , Yuen K. Yong

Virtual models are important for training and teaching tools used in medical imaging research. We introduce a workflow that can be used to convert volumetric medical imaging data (as generated by Computer Tomography (CT)) to computer-based…

Medical Physics · Physics 2024-02-05 Kaustav Bora , Adarsh Mishra , CS Kumar

Microplasmas can be used for a wide range of technological applications and to improve our understanding of fundamental physics. Scanning electron microscopy, on the other hand, provides insights into the sample morphology and chemistry of…

Due to the increasing availability and functionality of image editing tools, many forensic techniques such as digital image authentication, source identification and tamper detection are important for forensic image analysis. In this paper,…

Computer Vision and Pattern Recognition · Computer Science 2020-02-07 Ruiting Shao , Edward J. Delp

Scanning fluorescence correlation spectroscopy (SFCS) with a scan path perpendicular to the membrane plane was introduced to measure diffusion and interactions of fluorescent components in free standing biomembranes. Using a confocal laser…

Biomolecules · Quantitative Biology 2018-06-04 Paul Müller , Petra Schwille , Thomas Weidemann

Development of fast methods to conduct in silico experiments using computational models of cellular signaling is a promising approach toward advances in personalized medicine. However, software-based cellular network simulation has…

Molecular Networks · Quantitative Biology 2018-11-20 Kevin Gilboy , Khaled Sayed , Niteesh Sundaram , Kara Bocan , Natasa Miskov-Zivanov

Ultracold quantum gases offer unique possibilities to study interacting many-body quantum systems. Probing and manipulating such systems with ever increasing degree of control requires novel experimental techniques. Scanning electron…

Quantum Gases · Physics 2015-09-14 Bodhaditya Santra , Herwig Ott

A method is described intended for distributed calibration of a probe microscope scanner consisting in a search for a net of local calibration coefficients (LCCs) in the process of automatic measurement of a standard surface, whereby each…

Materials Science · Physics 2018-12-13 Rostislav V. Lapshin

We have developed a Parallel Integrated Control and Training System, leveraging the deep reinforcement learning to dynamically adjust the control strategies in real time for scanning probe microscopy techniques.

Materials Science · Physics 2025-02-12 Ziwei Wei , Shuming Wei , Qibin Zeng , Wanheng Lu , Huajun Liu , Kaiyang Zeng

Quantum computing offers significant speedups for simulating physical, chemical, and biological systems, and for optimization and machine learning. As quantum software grows in complexity, the classical simulation of quantum computers,…

Monte Carlo simulations are a unique tool to check the response of a detector and to monitor its performance. For a deep-sea neutrino telescope, the variability of the environmental conditions that can affect the behaviour of the data…

High Energy Astrophysical Phenomena · Physics 2021-02-03 The ANTARES Collaboration , A. Albert , M. André , M. Anghinolfi , G. Anton , M. Ardid , J. -J. Aubert , J. Aublin , B. Baret , S. Basa , B. Belhorma , V. Bertin , S. Biagi , M. Bissinger , J. Boumaaza , M. Bouta , M. C. Bouwhuis , H. Branzas , R. Bruijn , J. Brunner , J. Busto , A. Capone , L. Caramete , J. Carr , S. Cecchini , S. Celli , M. Chabab , T. N. Chau , R. Cherkaoui El Moursli , T. Chiarusi , M. Circella , A. Coleiro , M. Colomer-Molla , R. Coniglione , P. Coyle , A. Creusot , A. F. Diaz , G. de Wasseige , A. Deschamps , C. Distefano , I. Di Palma , A. Domi , C. Donzaud , D. Dornic , D. Drouhin , T. Eberl , N. El Khayati , A. Enzenhofer , A. Ettahiri , P. Fermani , G. Ferrara , F. Filippini , L. Fusco , P. Gay , H. Glotin , R. Gozzini , K. Graf , C. Guidi , S. Hallmann , H. van Haren , A. J. Heijboer , Y. Hello , J. J. Hernandez-Rey , J. Hossl , J. Hofestadt , F. Huang , G. Illuminati , C. W. James , M. de Jong , P. de Jong , M. Jongen , M. Kadler , O. Kalekin , U. Katz , N. R. Khan-Chowdhury , A. Kouchner , I. Kreykenbohm , V. Kulikovskiy , R. Lahmann , R. Le Breton , D. Lefevre , E. Leonora , G. Levi , M. Lincetto , D. Lopez-Coto , S. Loucatos , J. Manczak , M. Marcelin , A. Margiotta , A. Marinelli , J. A. Martinez-Mora , S. Mazzou , K. Melis , P. Migliozzi , M. Moser , A. Moussa , R. Muller , L. Nauta , S. Navas , E. Nezri , A. Nunez-Castineyra , B. O'Fearraigh , M. Organokov , G. E. Pavalas , C. Pellegrino , M. Perrin-Terrin , P. Piattelli , C. Poirè , V. Popa , T. Pradier , N. Randazzo , S. Reck , G. Riccobene , F. Salesa , A. Sanchez-Losa , D. F. E. Samtleben , M. Sanguineti , P. Sapienza , J. Schnabel , F. Schussler , M. Spurio , Th. Stolarczyk , B. Strandberg , M. Taiuti , Y. Tayalati , T. Thakore , S. J. Tingay , B. Vallage , V. Van Elewyck , F. Versari , S. Viola , D. Vivolo , J. Wilms , A. Zegarelli , J. D. Zornoza , J. Zuniga

Simulation of atomic resolution image formation in scanning transmission electron microscopy can require significant computation times using traditional methods. A recently developed method, termed plane-wave reciprocal-space interpolated…

Computational Physics · Physics 2017-07-07 Alan Pryor , Colin Ophus , Jianwei Miao

We present the details of a simulation suite for modeling the effects of readout with SLAC Microresonator RF (SMuRF) electronics. The SMuRF electronics are a warm readout and control system for use with superconducting microwave…

Instrumentation and Methods for Astrophysics · Physics 2022-08-04 Cyndia Yu , Zeeshan Ahmed , J. Mitch D'Ewart , Josef C. Frisch , Shawn W. Henderson , Max Silva-Feaver

The use of nuclear emulsions in very large physics experiments is now possible thanks to the recent improvements in the industrial production of emulsions and to the development of fast automated microscopes. In this paper the hardware…

Real-time simulation of a large-scale biologically representative spiking neural network is presented, through the use of a heterogeneous parallelisation scheme and SpiNNaker neuromorphic hardware. A published cortical microcircuit model is…

Emerging Technologies · Computer Science 2021-04-28 Oliver Rhodes , Luca Peres , Andrew G. D. Rowley , Andrew Gait , Luis A. Plana , Christian Brenninkmeijer , Steve B. Furber

Spectroscopy is an indispensable tool in understanding the structures and dynamics of molecular systems. However computational modelling of spectroscopy is challenging due to the exponential scaling of computational complexity with system…

Quantum Physics · Physics 2021-06-22 Chee-Kong Lee , Chang-Yu Hsieh , Shengyu Zhang , Liang Shi

Rapid advances in quantum computing technology lead to an increasing need for software simulators that enable both algorithm design and the validation of results obtained from quantum hardware. This includes calculations that aim at probing…

Quantum Physics · Physics 2025-01-09 Amit Jamadagni , Andreas M. Läuchli , Cornelius Hempel

{\mu}Manager, an open-source microscopy acquisition software, has been an essential tool for many microscopy experiments over the past 15 years, but is not easy to use for experiments in which image acquisition and analysis are closely…

Quantitative Methods · Quantitative Biology 2024-02-12 Henry Pinkard , Nico Stuurman , Laura Waller

The rapid development of computation power and machine learning algorithms has paved the way for automating scientific discovery with a scanning probe microscope (SPM). The key elements towards operationalization of automated SPM are the…

Real-time control systems often require dedicated hardware and software, including real-time operating systems, while many systems are available for off-line computing, mainly based on standard system units (PCs), standard network…

Instrumentation and Detectors · Physics 2007-05-23 F. Acernese , F. Barone , R. De Rosa , R. Esposito , P. Mastroserio , L. Milano , S. Pardi , K. Qipiani , F. Silvestri , G. Spadaccini