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We consider the problem of non-adaptive group testing of $N$ items out of which $K$ or less items are known to be defective. We propose a testing scheme based on left-and-right-regular sparse-graph codes and a simple iterative decoder. We…

Information Theory · Computer Science 2017-01-27 Avinash Vem , Nagaraj T. Janakiraman , Krishna R. Narayanan

\emph{Group Testing} (GT) addresses the problem of identifying a small subset of defective items from a large population, by grouping items into as few test pools as possible. In \emph{Adaptive GT} (AGT), outcomes of previous tests can…

Information Theory · Computer Science 2020-08-17 Alejandro Cohen , Asaf Cohen , Omer Gurewitz

We consider adaptive group testing in the linear regime, where the number of defective items scales linearly with the number of items. We analyse an algorithm based on generalized binary splitting. Provided fewer than half the items are…

Information Theory · Computer Science 2020-04-07 Matthew Aldridge

The group testing problem asks for efficient pooling schemes and algorithms that allow to screen moderately large numbers of samples for rare infections. The goal is to accurately identify the infected samples while conducting the least…

Artificial Intelligence · Computer Science 2021-05-19 AminCoja-Oghlan , Max Hahn-Klimroth , Philipp Loick , Manuel Penschuck

Applied statistical problems often come with pre-specified groupings to predictors. It is natural to test for the presence of simultaneous group-wide signal for groups in isolation, or for multiple groups together. Classical tests for the…

Applications · Statistics 2015-11-25 Stephen Reid , Jonathan Taylor , Robert Tibshirani

Identification of defective members of large populations has been widely studied in the statistics community under the name of group testing. It involves grouping subsets of items into different pools and detecting defective members based…

Information Theory · Computer Science 2016-11-18 Mahdi Cheraghchi , Ali Hormati , Amin Karbasi , Martin Vetterli

The goal of combinatorial group testing is to efficiently identify up to $d$ defective items in a large population of $n$ items, where $d \ll n$. Defective items satisfy certain properties while the remaining items in the population do not.…

Information Theory · Computer Science 2019-04-02 Thach V. Bui , Minoru Kuribayashi , Mahdi Cheraghchi , Isao Echizen

In this paper, we propose algorithms that leverage a known community structure to make group testing more efficient. We consider a population organized in disjoint communities: each individual participates in a community, and its infection…

Information Theory · Computer Science 2021-03-18 Pavlos Nikolopoulos , Tao Guo , Sundara Rajan Srinivasavaradhan , Christina Fragouli , Suhas Diggavi

The group testing problem concerns discovering a small number of defective items within a large population by performing tests on pools of items. A test is positive if the pool contains at least one defective, and negative if it contains no…

Information Theory · Computer Science 2026-05-15 Matthew Aldridge , Oliver Johnson , Jonathan Scarlett

In this paper, we introduce a variation of the group testing problem capturing the idea that a positive test requires a combination of multiple ``types'' of item. Specifically, we assume that there are multiple disjoint \emph{semi-defective…

Information Theory · Computer Science 2024-05-10 Thach V. Bui , Jonathan Scarlett

We study practically efficient methods for performing combinatorial group testing. We present efficient non-adaptive and two-stage combinatorial group testing algorithms, which identify the at most d items out of a given set of n items that…

Data Structures and Algorithms · Computer Science 2011-11-09 David Eppstein , Michael T. Goodrich , Daniel S. Hirschberg

Non-adaptive group testing refers to the problem of inferring a sparse set of defectives from a larger population using the minimum number of simultaneous pooled tests. Recent positive results for noiseless group testing have motivated the…

Information Theory · Computer Science 2021-07-16 Gabriel Arpino , Nicolò Grometto , Afonso S. Bandeira

Group testing is a well-known search problem that consists in detecting of $s$ defective members of a set of $t$ samples by carrying out tests on properly chosen subsets of samples. In classical group testing the goal is to find all…

Information Theory · Computer Science 2020-05-19 Ilya Vorobyev

We study the problem of estimating the number of defective items in adaptive Group testing by using a minimum number of queries. We improve the existing algorithm and prove a lower bound that show that, for constant estimation, the number…

Data Structures and Algorithms · Computer Science 2023-12-22 Nader H. Bshouty , Vivian E. Bshouty-Hurani , George Haddad , Thomas Hashem , Fadi Khoury , Omar Sharafy

Group testing is a well known search problem that consists in detecting the defective members of a set of objects O by performing tests on properly chosen subsets (pools) of the given set O. In classical group testing the goal is to find…

Data Structures and Algorithms · Computer Science 2016-06-13 Annalisa De Bonis

We consider some computationally efficient and provably correct algorithms with near-optimal sample-complexity for the problem of noisy non-adaptive group testing. Group testing involves grouping arbitrary subsets of items into pools. Each…

Information Theory · Computer Science 2016-11-18 Chun Lam Chan , Sidharth Jaggi , Venkatesh Saligrama , Samar Agnihotri

In this paper, we derive mutual information based upper and lower bounds on the number of nonadaptive group tests required to identify a given number of "non defective" items from a large population containing a small number of "defective"…

Information Theory · Computer Science 2016-03-01 Abhay Sharma , Chandra R. Murthy

The conventional model of disjunctive group testing assumes that there are several defective elements (or defectives) among a large population, and a group test yields the positive response if and only if the testing group contains at least…

Information Theory · Computer Science 2019-08-20 A. G. D'yachkov , N. A. Polyanskii , V. Yu. Shchukin , I. V. Vorobyev

The group testing problem consists of determining a small set of defective items from a larger set of items based on a number of possibly-noisy tests, and has numerous practical applications. One of the defining features of group testing is…

Information Theory · Computer Science 2021-11-12 Bernard Teo , Jonathan Scarlett

Efficient two-stage group testing algorithms that are particularly suited for rapid and less-expensive DNA library screening and other large scale biological group testing efforts are investigated in this paper. The main focus is on novel…

Data Structures and Algorithms · Computer Science 2018-07-03 Michael Huber