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Related papers: Convective Replica-Exchange in Ergodic Regimes

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We extend replica exchange simulation in two ways, and apply our approaches to biomolecules. The first generalization permits exchange simulation between models of differing resolution -- i.e., between detailed and coarse-grained models.…

Biomolecules · Quantitative Biology 2009-11-11 Edward Lyman , F. Marty Ytreberg , Daniel M. Zuckerman

We report experimental measurements of heat transport in rotating Rayleigh-B{\'e}nard convection in a cylindrical convection cell with aspect ratio $\Gamma = 1/2$. The fluid was helium gas with Prandtl number Pr = 0.7. The range of control…

Fluid Dynamics · Physics 2015-06-17 Robert E. Ecke , Joseph J. Niemela

An experiment of thermal convection with significant compressible effects is presented. The high-gravity environment of a centrifuge and the choice of xenon gas enable us to observe an average adiabatic temperature gradient up to 3.5 K…

Transport in disordered media is a central theme in probability and statistical physics, where randomness in the underlying medium produces phenomena such as localization, anomalous scaling, and slow relaxation. A paradigmatic model for…

Probability · Mathematics 2026-03-25 Luca Avena , Conrado da Costa

We introduce a variant of the asymmetric random average process with continuous state variables where the maximal transport is restricted by a cutoff. For periodic boundary conditions, we show the existence of a phase transition between a…

Statistical Mechanics · Physics 2009-11-07 Frank Zielen , Andreas Schadschneider

The regimes of possible global atmospheric circulation patterns in an Earth-like atmosphere are explored using a simplified GCM based on the University of Hamburg's Portable University Model for the Atmosphere with simplified (linear)…

Earth and Planetary Astrophysics · Physics 2019-06-19 Yixiong Wang , Peter Read , Fachreddin Tabataba-Vakili , Roland Young

Numerical simulations of turbulent Rayleigh-B\'enard convection in an ideal gas, using either the anelastic approximation or the fully compressible equations, are compared. Theoretically, the anelastic approximation is expected to hold in…

Solar and Stellar Astrophysics · Physics 2015-05-27 Jan Verhoeven , Thomas Wiesehöfer , Stephan Stellmach

A simple exact-exchange density-functional method for a quasi-two-dimensional electron gas with variable density is presented. An analytical expression for the exact-exchange potential with only one occupied subband is provided, without…

Condensed Matter · Physics 2009-11-07 F. A. Reboredo , C. R. Proetto

Random Walks in Cooling Random Environments (RWCRE) is a model of random walks in dynamic random environments where the environment is frozen between a fixed sequence of times (called the cooling map) where it is resampled. Naturally the…

Probability · Mathematics 2025-02-20 Conrado da Costa , Jonathon Peterson , Yongjia Xie

Transition interface sampling (TIS) and replica exchange TIS (RETIS) are powerful methods for computing rates of rare events inaccessible to straightforward molecular dynamics (MD) simulations. Path reweighting extends their output,…

Chemical Physics · Physics 2026-05-15 Titus S. van Erp , Daniel T. Zhang , Elias Wils , Sina Safaei , An Ghysels

In this paper we analyze a PDE system modelling (non-isothermal) phase transitions and damage phenomena in thermoviscoelastic materials. The model is thermodynamically consistent: in particular, no {\em small perturbation assumption} is…

Analysis of PDEs · Mathematics 2014-11-20 Elisabetta Rocca , Riccarda Rossi

In this paper we carry out a numerical investigation of forced convection heat transfer from a heated elliptical cylinder in a uniform free stream with angle of inclination $\theta^{\circ}$. Numerical simulations were carried out for $10…

Fluid Dynamics · Physics 2023-08-21 Raghav Singhal , Sailen Dutta , Jiten C. Kalita

In this short note we sketch the statistical physics framework of the replica exchange technique when applied to molecular dynamics simulations. In particular, we draw attention to generalized move sets that allow a variety of optimizations…

Quantitative Methods · Quantitative Biology 2009-11-13 Walter Nadler , Ulrich H. E. Hansmann

Numerical analytical heat transfer models play a critical role in geothermal design and feasibility studies. Classical solutions, such as those proposed by Gringarten et al. 1975, rely on simplified assumptions and systematically…

We investigate the stability and dynamics of natural convection in two dimensions, subject to inhomogeneous boundary conditions. In particular, we consider a Rayleigh-B\`enard (RB) cell, where the horizontal top boundary contains a periodic…

Fluid Dynamics · Physics 2014-03-14 P. Ripesi , L. Biferale , M. Sbragaglia , A. Wirth

The possibility of subcritical behaviour in the geostrophic turbulence regime of rapidly rotating thermally driven convection is explored. In this regime a non-local inverse energy transfer may compete with the more traditional and local…

Fluid Dynamics · Physics 2019-02-20 Benjamin Favier , Céline Guervilly , Edgar Knobloch

A new, very fast, implementation of the exact (Fock) exchange operator for electronic structure calculations within the plane-wave pseudopotential method is described in detail for both molecular and periodic systems, and carefully…

Materials Science · Physics 2018-12-12 Ivan Carnimeo , Stefano Baroni , Paolo Giannozzi

The computational bottleneck of molecular dynamics is the pairwise additive long-range interactions between particles. The random batch Ewald (RBE) method provides a highly efficient and superscalable solver for long-range interactions, but…

Chemical Physics · Physics 2023-12-29 Jiuyang Liang , Zhenli Xu , Yue Zhao

The nematic-isotropic (NI) phase transition of 4-cyano-4'-pentylbiphenyl (5CB) was simulated using the generalized replica-exchange method (gREM) based on molecular dynamics simulations. The effective temperature is introduced in gREM,…

Soft Condensed Matter · Physics 2022-01-04 Kengo Takemoto , Yoshiki Ishii , Hitoshi Washizu , Kang Kim , Nobuyuki Matubayasi

When rotating classical fluid drops merge together, angular momentum can be advected from one to another due to the viscous shear flow at the drop interface. It remains elusive what the corresponding mechanism is in inviscid quantum fluids…

Quantum Gases · Physics 2020-03-18 Toshiaki Kanai , Wei Guo , Makoto Tsubota , Dafei Jin