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Clustering points in a vector space or nodes in a graph is a ubiquitous primitive in statistical data analysis, and it is commonly used for exploratory data analysis. In practice, it is often of interest to "refine" or "improve" a given…
Large-scale L1-regularized loss minimization problems arise in high-dimensional applications such as compressed sensing and high-dimensional supervised learning, including classification and regression problems. High-performance algorithms…
In graph modification problems, one is given a graph G and the goal is to apply a minimum number of modification operations (such as edge deletions) to G such that the resulting graph fulfills a certain property. For example, the Cluster…
We study two clustering problems, Starforest Editing, the problem of adding and deleting edges to obtain a disjoint union of stars, and the generalization Bicluster Editing. We show that, in addition to being NP-hard, none of the problems…
In this paper, we consider sparse networks consisting of a finite number of non-overlapping communities, i.e. disjoint clusters, so that there is higher density within clusters than across clusters. Both the intra- and inter-cluster edge…
We develop data structures for dynamic closest pair problems with arbitrary distance functions, that do not necessarily come from any geometric structure on the objects. Based on a technique previously used by the author for Euclidean…
The community detection problem for graphs asks one to partition the n vertices V of a graph G into k communities, or clusters, such that there are many intracluster edges and few intercluster edges. Of course this is equivalent to finding…
We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…
Clustering is a fundamental problem in unsupervised machine learning with many applications in data analysis. Popular clustering algorithms such as Lloyd's algorithm and $k$-means++ can take $\Omega(ndk)$ time when clustering $n$ points in…
A clique in an undirected graph G= (V, E) is a subset V' V of vertices, each pair of which is connected by an edge in E. The clique problem is an optimization problem of finding a clique of maximum size in graph. The clique problem is…
Graph-based clustering methods like spectral clustering and SpectralNet are very efficient in detecting clusters of non-convex shapes. Unlike the popular $k$-means, graph-based clustering methods do not assume that each cluster has a single…
In this paper we propose a graph-based data clustering algorithm which is based on exact clustering of a minimum spanning tree in terms of a minimum isoperimetry criteria. We show that our basic clustering algorithm runs in $O(n \log n)$…
Vertex deletion to hereditary graph class is well-studied in parameterized complexity. Vertex deletion to the scattered graph classes has gained attention in recent years. In this paper, we consider (Proper-Interval, Tree)-Vertex Deletion,…
Modern graph or network datasets often contain rich structure that goes beyond simple pairwise connections between nodes. This calls for complex representations that can capture, for instance, edges of different types as well as so-called…
A matching cut of a graph is a partition of its vertex set in two such that no vertex has more than one neighbor across the cut. The Matching Cut problem asks if a graph has a matching cut. This problem, and its generalization d-cut, has…
We present a new type of cluster algorithm that strongly reduces critical slowing down in simulations of vertex models. Since the clusters are closed paths of bonds, we call it the {\em loop algorithm}. The basic steps in constructing a…
Given a bipartite graph $G$, the \textsc{Bicluster Editing} problem asks for the minimum number of edges to insert or delete in $G$ so that every connected component is a bicluster, i.e. a complete bipartite graph. This has several…
Subexponential parameterized algorithms are known for a wide range of natural problems on planar graphs, but the techniques are usually highly problem specific. The goal of this paper is to introduce a framework for obtaining…
Although the inference of global community structure in networks has recently become a topic of great interest in the physics community, all such algorithms require that the graph be completely known. Here, we define both a measure of local…
Graph clustering is an important technique to understand the relationships between the vertices in a big graph. In this paper, we propose a novel random-walk-based graph clustering method. The proposed method restricts the reach of the…