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Despite the enormous relevance of zoonotic infections to world- wide public health, and despite much effort in modeling individual zoonoses, a fundamental understanding of the disease dynamics and the nature of outbreaks arising in such…

Populations and Evolution · Quantitative Biology 2013-07-18 Sarabjeet Singh , David J. Schneider , Christopher R. Myers

We introduce and investigate a series of models for an infection of a diplodiploid host species by the bacterial endosymbiont \textit{Wolbachia}. The continuous models are characterized by partial vertical transmission, cytoplasmic…

Classical Analysis and ODEs · Mathematics 2019-03-25 Jozsef Z. Farkas , Peter Hinow

Understanding how microbes interact with each other is key to revealing the underlying role that microorganisms play in the host or environment and to identifying microorganisms as an agent that can potentially alter the host or…

Applications · Statistics 2022-07-05 Chuan Tian , Duo Jiang , Austin Hammer , Thomas Sharpton , Yuan Jiang

Liquid-liquid phase separation is important across biology, physics, and materials science. Although usually studied at equilibrium, active components - such as motor proteins, enzymes, and synthetic microswimmers - are increasingly…

Soft Condensed Matter · Physics 2026-01-06 Kan Chang , Yulin Li , Ming Yuan , Masaki Sano , Zhihong You , H. P. Zhang

A recent application of the peptide strings concept has yielded novel perceptions on cell growth regulation, for instance that of oncoprotein metastasis. Here, this interdisciplinary approach at the boundary between physics and biology has…

Subcellular Processes · Quantitative Biology 2008-08-12 Razvan Tudor Radulescu

Metastases are the primary cause of death in cancer patients. Small animal models are helping in dissecting some of key features in the metastatic cascade. Yet, tools for systematically analyze the contribution of blood flow, vascular…

Cell Behavior · Quantitative Biology 2019-07-31 Hilaria Mollica , Roberto Palomba , Rosita Primavera , Paolo Decuzzi

Backdoor attacks involve the injection of a limited quantity of poisoned examples containing triggers into the training dataset. During the inference stage, backdoor attacks can uphold a high level of accuracy for normal examples, yet when…

Cryptography and Security · Computer Science 2024-06-25 Hanfeng Xia , Haibo Hong , Ruili Wang

Proliferation of uninfected as well as infected hepatocytes and recycling of DNA-containing capsids are two major mechanisms playing significant roles in the clearance of hepatitis B virus (HBV) infection. In this study, the temporal…

Populations and Evolution · Quantitative Biology 2024-01-23 Rupchand Sutradhar , D C Dalal

We investigate a stochastic individual-based model for the population dynamics of host-virus systems where the microbial hosts may transition into a dormant state upon contact with virions, thus evading infection. Such a contact-mediated…

Populations and Evolution · Quantitative Biology 2022-11-07 Jochen Blath , András Tóbiás

p27$^{Kip1}$ (p27) is an intrinsically disordered protein (IDP) that folds upon binding to cyclin-dependent kinase (Cdk)$/$cyclin complexes (e.g., Cdk2$/$cyclin A), inhibiting their catalytic activity and causing cell cycle arrest. However,…

Characterization of host responses associated with severe malaria through an integrative approach is necessary to understand the dynamics of a \textit{Plasmodium cynomolgi} infection. In this study, we conducted temporal immune profiling,…

Tissues and Organs · Quantitative Biology 2017-07-03 Yi H. Yan , Diego M. Moncada , Elizabeth D. Trippe , Juan B. Gutierrez

Laboratory models are often used to understand the interaction of related pathogens via host immunity. For example, recent experiments where ferrets were exposed to two influenza strains within a short period of time have shown how the…

Populations and Evolution · Quantitative Biology 2018-06-06 Ada W. C. Yan , Sophie G. Zaloumis , Julie A. Simpson , James M. McCaw

When the body is infected, it mounts an acute inflammatory response to rid itself of the pathogens and restore health. Uncontrolled acute inflammation due to infection is defined clinically as Sepsis and can culminate in organ failure and…

Tissues and Organs · Quantitative Biology 2007-05-23 Rukmini Kumar , Gilles Clermont , Yoram Vodovotz , Carson Chow

Intrinsically disordered proteins participate in many biological processes by folding upon binding with other proteins. However, coupled folding and binding processes are not well understood from an atomistic point of view. One of the main…

Biomolecules · Quantitative Biology 2023-02-22 Pablo Herrera-Nieto , Adrià Pérez , Gianni De Fabritiis

Cost-effectiveness analyses, based on decision-analytic models of disease progression and treatment, are routinely used to assess the economic value of a new intervention and consequently inform reimbursement decisions for the intervention.…

Systems and Control · Electrical Eng. & Systems 2026-02-17 Soham Das , Ajit Sood , Vandana Midha , Arshdeep Singh , Pranjl Sharma , Varun Ramamohan

As offered by the World Health Organisation (WHO), close to half of the population in the world's resides in dengue-risk zones. Dengue viruses are transmitted to individuals by Aedes mosquito species infected bite (Ae. Albopictus of Ae.…

Populations and Evolution · Quantitative Biology 2025-03-12 Burcu Gürbüz , Aytül Gökçe , Segun I. Oke , Michael O. Adeniyi , Mayowa M. Ojo

Despite extensive control efforts over the centuries, cholera remains a globally significant health issue. Seasonal emergence of cholera cases has been reported, particularly in the Bengal delta region, which is often synchronized with…

Populations and Evolution · Quantitative Biology 2025-03-31 Biplab Maity , Swarnendu Banerjee , Abhishek Senapati , Jon Pitchford , Joydev Chattopadhyay

Interaction between active materials and the boundaries of geometrical confinement is key to many emergent phenomena in active systems. For living active matter consisting of animal cells or motile bacteria, the confinement boundary is…

Soft Condensed Matter · Physics 2022-08-29 Haoran Xu , Mehrana R. Nejad , Julia M. Yeomans , Yilin Wu

Human pathogens transmitted through environmental pathways are subject to stress and pressures outside of the host. These pressures may cause pathogen pathovars to diverge in their environmental persistence and their infectivity on an…

Populations and Evolution · Quantitative Biology 2018-02-16 Andrew F. Brouwer , Marisa C. Eisenberg , Nancy G. Love , Joseph N. S. Eisenberg

Symbiotic interactions between microbes and their multicellular hosts have manifold impacts on molecular, cellular and organismal biology. To identify candidate bacterial genes involved in maintaining endosymbiotic associations with insect…