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Experimental and empirical observations on cell metabolism cannot be understood as a whole without their integration into a consistent systematic framework. However, the characterization of metabolic flux phenotypes is typically reduced to…

Molecular Networks · Quantitative Biology 2015-09-03 Oriol Güell , Francesco Alessandro Massucci , Francesc Font-Clos , Francesc Sagués , M. Ángeles Serrano

Methods based on propagation of the one-body reduced density-matrix hold much promise for the simulation of correlated many-electron dynamics far from equilibrium, but difficulties with finding good approximations for the interaction term…

Chemical Physics · Physics 2016-02-12 Peter Elliott , Neepa T. Maitra

As mobile technologies become ever more sensor-rich, portable, and ubiquitous, data captured by smart devices are lending rich insights into users' daily lives with unprecedented comprehensiveness, unobtrusiveness, and ecological validity.…

Understanding the system level adaptive changes taking place in an organism in response to variations in the environment is a key issue of contemporary biology. Current modeling approaches such as the constraint-based flux balance analyses…

Molecular Networks · Quantitative Biology 2007-05-23 E. Almaas , Z. N. Oltvai , A. -L. Barabasi

We study quench dynamics in a t-V chain of spinless fermions (equivalent to the spin-1/2 Heisenberg chain) with strong potential disorder. For this prototypical model of many-body localization we have recently argued that -- contrary to the…

Disordered Systems and Neural Networks · Physics 2022-11-29 M. Kiefer-Emmanouilidis , R. Unanyan , M. Fleischhauer , J. Sirker

Few of food web theory hypotheses/predictions can be readily tested using empirical data. An exception is represented by simple probabilistic models for food web structure, for which the likelihood has been derived. Here I test the…

Populations and Evolution · Quantitative Biology 2009-11-12 Stefano Allesina

Focal plane arrays of bolometers are increasingly employed in astronomy at far--infrared to millimetre wavelengths. The focal plane fields and the detectors are both partially coherent in these systems, but no account has previously been…

Astrophysics · Physics 2009-11-13 George Saklatvala , Michael P. Hobson , Stafford Withington

The statistical properties of mostly expanding partially hyperbolic diffeomorphisms have been substantially studied. In this paper, we would like to address the entropy properties of mostly expanding partially hyperbolic diffeomorphisms. We…

Dynamical Systems · Mathematics 2024-01-24 Jinhua Zhang

We prove that the two dimensional Hubbard model at finite temperature T and half-filling is analytic in the coupling constant in a radius at least $c/(\log T)^2$. We also study the self-energy through a new two-particle irreducible…

Strongly Correlated Electrons · Physics 2009-11-10 Stephane Afchain , Jacques Magnen , Vincent Rivasseau

We examine the scaling law $B \propto M^{\alpha}$ which connects organismal metabolic rate $B$ with organismal mass $M$, where $\alpha$ is commonly held to be 3/4. Since simple dimensional analysis suggests $\alpha=2/3$, we consider this to…

Biological Physics · Physics 2007-05-23 Peter Sheridan Dodds , Daniel H. Rothman , Joshua S. Weitz

We study a size-structured model proposed in [1] C. Barril, \`A. Calsina, O. Diekmann, J. Z. Farkas, On competition through growth reduction, e-print arXiv:2303.02981, to describe the dynamics of trees growth in the forest. Our approach to…

Dynamical Systems · Mathematics 2024-01-19 Franco Herrera , Sergei Trofimchuk

We revisit the modeling of the diauxic growth of a pure microorganism on two distinct sugars which was first described by Monod. Most available models are deterministic and make the assumption that all cells of the microbial ecosystem…

Populations and Evolution · Quantitative Biology 2020-05-19 Carl Graham , Jérôme Harmand , Sylvie Méléard , Josué Tchouanti

We mathematically model the uptake of phosphorus by a soil community consisting of a plant and two bacterial groups: copiotrophs and oligotrophs. Four equilibrium states emerge, one for each of the species monopolising the resource and…

Populations and Evolution · Quantitative Biology 2020-10-28 Iain R Moyles , John G. Donohue , Andrew C. Fowler

Approximate exchange-correlation functionals built by modeling in a non-linear way the adiabatic connection (AC) integrand of density functional theory have many attractive features, being virtually parameters-free and satisfying different…

Chemical Physics · Physics 2018-05-25 S. Vuckovic , P. Gori-Giorgi , F. Della Sala , E. Fabiano

Linear constrained optimization techniques have been applied to many real-world settings. In recent years, inferring the unknown parameters and functions inside an optimization model has also gained traction. This inference is often based…

Optimization and Control · Mathematics 2020-10-16 Farzin Ahmadi , Fardin Ganjkhanloo , Kimia Ghobadi

We study ergodic properties of partially hyperbolic systems whose central direction is mostly contracting. Earlier work of Bonatti, Viana about existence and finitude of physical measures is extended to the case of local diffeomorphisms.…

Dynamical Systems · Mathematics 2008-10-14 Martin Andersson

We present some existence results for three-dimensional quasistatic morphoelasticity. The state of the growing body is described by its deformation and the underlying growth tensor and is ruled by the interplay of hyperelastic energy…

Analysis of PDEs · Mathematics 2021-11-23 Elisa Davoli , Katerina Nik , Ulisse Stefanelli

The Hubbard model is investigated in the framework of lattice density functional theory (LDFT). The single-particle density matrix $\gamma_{ij}$ with respect the lattice sites is considered as the basic variable of the many-body problem. A…

Strongly Correlated Electrons · Physics 2009-11-10 R. Lopez-Sandoval , G. M. Pastor

Body size or mass is one of the main factors underlying food webs structure. A large number of evolutionary models have shown that indeed, the adaptive evolution of body size (or mass) can give rise to hierarchically organised trophic…

Populations and Evolution · Quantitative Biology 2021-08-27 Coralie Fritsch , Sylvain Billiard , Nicolas Champagnat

Bacterial growth models are commonly used for the prediction of microbial safety and the shelf life of perishable foods. Growth is affected by several environmental factors such as temperature, acidity level and salt concentration. In this…

Applications · Statistics 2014-11-24 A. Paula Palacios , J. Miguel Marín , Emiliano J. Quinto , Michael P. Wiper