English
Related papers

Related papers: Electrostatic repulsion-driven crystallization mod…

200 papers

It is known from the wave-like motion of microtubules in motility assays that the piconewton forces that motors produce can be sufficient to bend the filaments. In cellular phenomena such as cytosplasmic streaming, molecular motors…

Soft Condensed Matter · Physics 2017-07-11 Gabriele De Canio , Eric Lauga , Raymond E. Goldstein

In active matter systems, deformable boundaries provide a mechanism to organize internal active stresses and perform work on the external environment. To study a minimal model of such a system, we perform particle-based simulations of an…

Soft Condensed Matter · Physics 2022-01-05 Matthew S. E. Peterson , Aparna Baskaran , Michael F. Hagan

Bacteria can form a great variety of spatially heterogeneous cell density patterns, ranging from simple concentric rings to dynamical spiral waves appearing in growing colonies. These pattern formation phenomena are important as they…

Populations and Evolution · Quantitative Biology 2025-01-17 John S. Chuang , Riccardo Rao , Stanislas Leibler

We study the response of F-actin bundles to driving forces through a simple analytical model. We consider two filaments connected by reversibly bound crosslinks and driven by an external force. Two failure modes under load can be defined.…

Soft Condensed Matter · Physics 2014-06-27 Poulomi Sadhukhan , Ole Schuman , Claus Heussinger

Recent experiments have exploited elastic instabilities in membranes to create complex patterns. However, the rational design of such structures poses many challenges, as they are products of nonlinear elastic behavior. We pose a simple…

Soft Condensed Matter · Physics 2009-08-13 Elisabetta A. Matsumoto , Randall D. Kamien

We present large-scale dynamical simulations of electronic phase separation in the single-band double-exchange model based on deep-learning neural-network potentials trained from small-size exact diagonalization solutions. We uncover an…

Strongly Correlated Electrons · Physics 2021-10-04 Puhan Zhang , Gia-Wei Chern

By means of extensive replica-exchange simulations of generic coarse-grained models for helical polymers, we systematically investigate the structural transitions into all possible helical phases for flexible and semiflexible elastic…

Biological Physics · Physics 2015-09-23 Matthew J. Williams , Michael Bachmann

We show how generative machine learning can be used for the rapid computation of strongly dynamical electron diffraction directly from crystal structures, specifically in large-angle convergent-beam electron diffraction (LACBED) patterns.…

Materials Science · Physics 2025-07-31 Joseph J. Webb , Richard Beanland , Rudolf A. Römer

The present study deals with the dynamics of a double emulsion confined in a microchannel under the presence of a uniform electric field. Towards investigating the non-trivial electrohydrodynamics of a compound droplet, confined in between…

Fluid Dynamics · Physics 2018-08-14 Somnath Santra , Sayan Das , Suman Chakraborty

Fracture in quasi-statically driven systems is studied by means of a discrete spring-block model. Developed from close comparison with desiccation experiments, it describes crack formation induced by friction on a substrate. The model…

Statistical Mechanics · Physics 2009-10-31 Kwan-tai Leung , Zoltan Neda

Motor proteins drive persistent motion and self-organisation of cytoskeletal filaments. However, state-of-the-art microscopy techniques and continuum modelling approaches focus on large length and time scales. Here, we perform…

Soft Condensed Matter · Physics 2024-06-03 Gerrit Vliegenthart , Arvind Ravichandran , Marisol Ripoll , Thorsten Auth , Gerhard Gompper

Elucidating long-range interaction guided organization of matter is a fundamental question in physical systems covering multiple length scales. Here, based on the hexagonal disk model, we analyze the characteristic inhomogeneity created by…

Soft Condensed Matter · Physics 2024-06-04 Zhenwei Yao

In the first part of the paper we show that the constraining potentials introduced to mimic entanglement effects in Edwards' tube model and Flory's constrained junction model are diagonal in the generalized Rouse modes of the corresponding…

Statistical Mechanics · Physics 2009-11-07 Boris Mergell , Ralf Everaers

We describe the formation of deposition patterns that are observed in many different experiments where a three-phase contact line of a volatile nanoparticle suspension or polymer solution recedes. A dynamical model based on a long-wave…

Fluid Dynamics · Physics 2011-06-24 Lubor Frastia , Andrew J. Archer , Uwe Thiele

We present molecular dynamics simulations of aggregation kinetics in a colloidal suspension modeled as a highly asymmetric binary mixture. Starting from a configuration with largely uncorrelated colloidal particles the system relaxes by…

Statistical Mechanics · Physics 2007-05-23 Sorin Bastea

The actin cytoskeleton of adherent tissue cells often condenses into filament bundles contracted by myosin motors, so-called stress fibers, which play a crucial role in the mechanical interaction of cells with their environment. Stress…

Subcellular Processes · Quantitative Biology 2015-05-27 Achim Besser , Julien Colombelli , Ernst H. K. Stelzer , Ulrich S. Schwarz

A confined incompressible elastic film does not deform uniformly when subjected to adhesive interfacial stresses but with undulations which have a characteristic wavelength scaling linearly with the thickness of the film. In the classical…

Soft Condensed Matter · Physics 2009-11-11 Animangsu Ghatak

The investigation of collective behaviour in dense assemblies of self-propelled active particles has been motivated by a wide range of biological phenomena. Of particular interest are dynamical transitions of cellular and sub-cellular…

Soft Condensed Matter · Physics 2023-12-05 Yagyik Goswami , G. V. Shivashankar , Srikanth Sastry

A continuum electromechanical model is proposed to describe the membrane curvature induced by electrostatic interactions in a solvated protein-membrane system. The model couples the macroscopic strain energy of membrane and the…

Quantitative Methods · Quantitative Biology 2015-05-19 Y. C. Zhou , Benzhuo Lu , Alemayehu A. Gorfe

We show that the presence of a localized drive in an otherwise diffusive system results in steady-state density and current profiles that decay algebraically to their global average value, away from the drive in two or higher dimensions. An…

Statistical Mechanics · Physics 2014-11-18 Tridib Sadhu , Satya N. Majumdar , David Mukamel