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In this paper, we introduce an autoencoder (AE)-based scheme for end-to-end optimization of a multi-user molecule mixture communication system. In the proposed scheme, each transmitter leverages an encoder network that maps the user symbol…

This work presents a new multi-chemical experimental platform for molecular communication where the transmitter can release different chemicals. This platform is designed to be inexpensive and accessible, and it can be expanded to simulate…

Emerging Technologies · Computer Science 2017-04-18 Nariman Farsad , David Pan , Andrea Goldsmith

Inter and intra-cellular signaling are essential for individual cells to execute various physiological tasks and accurately respond to changes in their environment. Signaling is carried out via diffusible molecules, the transport of which…

Soft Condensed Matter · Physics 2020-10-13 Sumantra Sarkar , Sandeep Choubey

This letter develops a one-dimensional (1D) diffusion-based molecular communication system to analyze channel responses between a single transmitter (TX) and two fully-absorbing receivers (RXs). Incorporating molecular degradation in the…

Emerging Technologies · Computer Science 2020-03-24 Xinyu Huang , Yuting Fang , Adam Noel , Nan Yang

Molecular communication is a bio-inspired communication paradigm where molecules are used as the information carrier. This paper considers a molecular communication network where the transmitter uses concentration modulated signals for…

Information Theory · Computer Science 2024-12-13 Chun Tung Chou

Most diffusion based molecular channels suffer from low information capacity due to the structure of the diffusion environment. To address this issue, this paper studies the capacity of the diffusion based molecular communication by…

Information Theory · Computer Science 2020-06-25 Farhad Mirkarimi , Mahtab Mirmohseni , Masoumeh Nasiri-Kenari

We used various analytical and numerical techniques to elucidate signal propagation in a small enzymatic cascade which is subjected to external and internal noise. The nonlinear character of catalytic reactions, which underlie protein…

Molecular Networks · Quantitative Biology 2009-11-13 Yueheng Lan , Garegin A. Papoian

This paper studies the problem of receiver modeling in molecular communication systems. We consider the diffusive molecular communication channel between a transmitter nano-machine and a receiver nano-machine in a fluid environment. The…

Emerging Technologies · Computer Science 2016-10-04 Arman Ahmadzadeh , Hamidreza Arjmandi , Andreas Burkovski , Robert Schober

A novel mechanism of reaction-induced active molecular motion, not involving any kind of self-propulsion, is proposed and analyzed. Because of the momentum exchange with the surrounding solvent, conformational transitions in…

Soft Condensed Matter · Physics 2023-04-19 Hiroyuki Kitahata , Alexander S. Mikhailov

We study the asymptotic behaviour of a system of nonlinear reaction--diffusion--advection equations in a domain consisting of two bulk regions connected via microscopic channels distributed within a thin membrane. Both the width of the…

Analysis of PDEs · Mathematics 2025-12-15 Lucas M. Fix , Gianna Götzmann , Malte A. Peter , Jan-F. Pietschmann

This paper studies the capacity of molecular communications in fluid media, where the information is encoded in the number of transmitted molecules in a time-slot (amplitude shift keying). The propagation of molecules is governed by random…

Information Theory · Computer Science 2016-04-29 Siavash Ghavami , Raviraj Adve , Farshad Lahouti

In this paper, we propose a molecular communication system to localize an abnormality in a diffusion based medium. We consider a general setup to perform joint sensing, communication and localization. This setup consists of three types of…

Signal Processing · Electrical Eng. & Systems 2022-04-01 Ladan Khaloopour , Mahtab Mirmohseni , Masoumeh Nasiri-Kenari

Molecular communication via diffusion (MCvD) is a molecular communication method that utilizes the free diffusion of carrier molecules to transfer information at the nano-scale. Due to the random propagation of carrier molecules,…

Emerging Technologies · Computer Science 2019-09-20 Mustafa Can Gursoy , Ertugrul Basar , Ali Emre Pusane , Tuna Tugcu

Many enzymes appear to diffuse faster in the presence of substrate and to drift either up or down a concentration gradient of their substrate. Observations of these phenomena, termed enhanced enzyme diffusion (EED) and enzyme chemotaxis,…

Chemical Physics · Physics 2019-10-29 Mudong Feng , Michael K. Gilson

In this paper, we study the performance of detectors in a diffusive molecular communication environment where steady uniform flow is present. We derive the expected number of information molecules to be observed in a passive spherical…

Information Theory · Computer Science 2014-10-17 Adam Noel , Karen C. Cheung , Robert Schober

Catalytically active enzymes have recently been observed to exhibit enhanced diffusion. In a recent work [C. Riedel et al., Nature 517, 227 (2015)], it has been suggested that this phenomenon is correlated with the degree of exothermicity…

Biological Physics · Physics 2016-08-29 Ramin Golestanian

In this paper, we consider a molecular diffusion based communications link that conveys information on the macro-scale (several metres). The motivation is to apply molecular-based communications to challenging electromagnetic environments.…

Networking and Internet Architecture · Computer Science 2016-11-18 Siyi Wang , Weisi Guo , Song Qiu , Mark D. McDonnell

In this paper, we present an analytical model for a diffusive molecular communication (MC) system with a reversible adsorption receiver in a fluid environment. The time-varying spatial distribution of the information molecules under the…

Information Theory · Computer Science 2016-04-08 Yansha Deng , Adam Noel , Maged Elkashlan , Arumugam Nallanathan , Karen C. Cheung

Signaling in enzymatic networks is typically triggered by environmental fluctuations, resulting in a series of stochastic chemical reactions, leading to corruption of the signal by noise. For example, information flow is initiated by…

Statistical Mechanics · Physics 2017-07-19 Himadri S. Samanta , Michael Hinczewski , D. Thirumalai

The activity of biological cells is primarily based on chemical reactions and typically modeled as a reaction-diffusion system. Cells are, however, highly crowded with macromolecules, including a variety of molecular machines such as…

Biological Physics · Physics 2018-11-02 Yuichi Togashi
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