Related papers: Compact q-gram Profiling of Compressed Strings

In the classical RAM, we have the following useful property. If we have an algorithm that uses $M$ memory cells throughout its execution, and in addition is sparse, in the sense that, at any point in time, only $m$ out of $M$ cells will be…

Let $S_{T}(k)$ denote the set of distinct substrings of length $k$ in a string $T$, then the $k$-th substring complexity is defined by its cardinality $|S_{T}(k)|$. Recently, $\delta = \max \{ |S_{T}(k)| / k : k \ge 1 \}$ is shown to be a…

Intervals have been generated in many applications (e.g., temporal databases), and they are often associated with weights, such as prices. This paper addresses the problem of processing top-k weighted stabbing queries on interval data.…

We consider the problem of computing a shortest solid cover of an indeterminate string. An indeterminate string may contain non-solid symbols, each of which specifies a subset of the alphabet that could be present at the corresponding…

Binary jumbled pattern matching asks to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of length $i$ and has exactly $j$ 1-bits. This problem naturally generalizes to…

We present an algorithm that constructs the LZ-End parsing (a variation of LZ77) of a given string of length $n$ in $O(n\log\ell)$ expected time and $O(z + \ell)$ space, where $z$ is the number of phrases in the parsing and $\ell$ is the…

This thesis concerns sequential-access data compression, i.e., by algorithms that read the input one or more times from beginning to end. In one chapter we consider adaptive prefix coding, for which we must read the input character by…

We show that if DTIME[2^O(n)] is not included in DSPACE[2^o(n)], then, for every set B in PSPACE/poly, all strings x in B of length n can be represented by a string compressed(x) of length at most log(|B^{=n}|)+O(log n), such that a…

In this paper, we propose a data structure, a quadruple neighbor list (QN-list, for short), to support real time queries of all longest increasing subsequence (LIS) and LIS with constraints over sequential data streams. The QN-List built by…

We design quantum compression algorithms for parametric families of tensor network states. We first establish an upper bound on the amount of memory needed to store an arbitrary state from a given state family. The bound is determined by…

Assume that an $N$-bit sequence $S$ of $k$ numbers encoded as Elias gamma codes is given as input. We present space-efficient algorithms for sorting, dense ranking and competitive ranking on $S$ in the word RAM model with word size…

Given a set of strings, the shortest common superstring problem is to find the shortest possible string that contains all the input strings. The problem is NP-hard, but a lot of work has gone into designing approximation algorithms for…

It is known that the dual of the general adversary bound can be used to build quantum query algorithms with optimal complexity. Despite this result, not many quantum algorithms have been designed this way. This paper shows another example…

We show that the compressed suffix array and the compressed suffix tree for a string of length $n$ over an integer alphabet of size $\sigma\leq n$ can both be built in $O(n)$ (randomized) time using only $O(n\log\sigma)$ bits of working…

We describe a data structure that supports access, rank and select queries, as well as symbol insertions and deletions, on a string $S[1,n]$ over alphabet $[1..\sigma]$ in time $O(\lg n/\lg\lg n)$, which is optimal even on binary sequences…

In memory-constrained algorithms we have read-only access to the input, and the number of additional variables is limited. In this paper we introduce the compressed stack technique, a method that allows to transform algorithms whose space…

Sample complexity bounds are a common performance metric in the Reinforcement Learning literature. In the discounted cost, infinite horizon setting, all of the known bounds have a factor that is a polynomial in $1/(1-\gamma)$, where $\gamma…

The rise of repetitive datasets has lately generated a lot of interest in compressed self-indexes based on dictionary compression, a rich and heterogeneous family that exploits text repetitions in different ways. For each such compression…

Shannon's entropy is a definitive lower bound for statistical compression. Unfortunately, no such clear measure exists for the compressibility of repetitive strings. Thus, ad hoc measures are employed to estimate the repetitiveness of…

In this work, we study the limits of compressed data structures, i.e., structures that support various queries on an input text $T\in\Sigma^n$ using space proportional to the size of $T$ in compressed form. Nearly all fundamental queries…