Related papers: Compact q-gram Profiling of Compressed Strings

A $P_q(t,k,n)$ $q$-packing design is a selection of $k$-subspaces of $\F_q^n$ such that each $t$-subspace is contained in at most one element of the collection. A successful approach adopted from the Kramer-Mesner-method of prescribing a…

In this work, we present a quantum query algorithm for searching a word of length $m$ in an unsorted dictionary of size $n$. The algorithm uses $O(\sqrt{n})$ queries (Grover operators), like previously known algorithms. What is new is that…

We present one-shot compression protocols that optimally encode ensembles of $N$ identically prepared mixed states into $O(\log N)$ qubits. In contrast to the case of pure-state ensembles, we find that the number of encoding qubits drops…

A $\textit{compression scheme}$ $A$ for a class $\mathbb{G}$ of graphs consists of an encoding algorithm $\textit{Encode}_A$ that computes a binary string $\textit{Code}_A(G)$ for any given graph $G$ in $\mathbb{G}$ and a decoding algorithm…

We study quantum algorithms for testing bipartiteness and expansion of bounded-degree graphs. We give quantum algorithms that solve these problems in time O(N^(1/3)), beating the Omega(sqrt(N)) classical lower bound. For testing expansion,…

In the Proper Interval Completion problem we are given a graph G and an integer k, and the task is to turn G using at most k edge additions into a proper interval graph, i.e., a graph admitting an intersection model of equal-length…

We show that, given a string $s$ of length $n$, with constant memory and logarithmic passes over a constant number of streams we can build a context-free grammar that generates $s$ and only $s$ and whose size is within an $\Oh{\min (g \log…

We present a new graph compressor that works by recursively detecting repeated substructures and representing them through grammar rules. We show that for a large number of graphs the compressor obtains smaller representations than other…

Graph similarity search has received considerable attention in many applications, such as bioinformatics, data mining, pattern recognition, and social networks. Existing methods for this problem have limited scalability because of the huge…

The problem of listing the $K$ shortest simple (loopless) $st$-paths in a graph has been studied since the early 1960s. For a non-negatively weighted graph with $n$ vertices and $m$ edges, the most efficient solution is an $O(K(mn + n^2…

The problem of constructing optimal factoring automata arises in the context of unification factoring for the efficient execution of logic programs. Given an ordered set of $n$ strings of length $m$, the problem is to construct a trie-like…

Although real-world text datasets, such as DNA sequences, are far from being uniformly random, average-case string searching algorithms perform significantly better than worst-case ones in most applications of interest. In this paper, we…

A descent algorithm, "Quasi-Quadratic Minimization with Memory" (QQMM), is proposed for unconstrained minimization of the sum, $F$, of a non-negative convex function, $V$, and a quadratic form. Such problems come up in regularized…

Quantum algorithms for binary optimization problems have been the subject of extensive study. However, the application of quantum algorithms to integer optimization problems remains comparatively unexplored. In this paper, we study the…

We show that approximating the trace norm contraction coefficient of a quantum channel within a constant factor is NP-hard. Equivalently, this shows that determining the optimal success probability for encoding a bit in a quantum system…

We revisit the fundamental problem of dictionary look-up with mismatches. Given a set (dictionary) of $d$ strings of length $m$ and an integer $k$, we must preprocess it into a data structure to answer the following queries: Given a query…

We consider a variation of the spectral sparsification problem where we are required to keep a subgraph of the original graph. Formally, given a union of two weighted graphs $G$ and $W$ and an integer $k$, we are asked to find a $k$-edge…

Usually, a parser for an $LR(k)$-grammar $G$ is a deterministic pushdown transducer which produces backwards the unique rightmost derivation for a given input string $x \in L(G)$. The best known upper bound for the size of such a parser is…

As a signal recovery algorithm, compressed sensing is particularly useful when the data has low-complexity and samples are rare, which matches perfectly with the task of quantum phase estimation (QPE). In this work we present a new…

We consider the problem of encoding a string of length $n$ from an integer alphabet of size $\sigma$ so that access and substring equality queries (that is, determining the equality of any two substrings) can be answered efficiently. Any…