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Clustering methods must be tailored to the dataset it operates on, as there is no objective or universal definition of ``cluster,'' but nevertheless arbitrariness in the clustering method must be minimized. This paper develops a…

Information Theory · Computer Science 2024-05-03 Brian Weber

The ability of a honeybee swarm to select the best nest site plays a fundamental role in determining the future colony's fitness. To date, the nest-site selection process has mostly been modelled and theoretically analysed for the case of…

Biological Physics · Physics 2017-06-06 Andreagiovanni Reina , James A. R. Marshall , Vito Trianni , Thomas Bose

Bacteria organize in a variety of collective states, from swarming, which has been attributed to rapid surface exploration, to biofilms, which are highly dense immobile communities attributed to stress resistance. It has been suggested that…

We study the universal behavior of a class of active colloids whose design is inspired by the collective dynamics of natural systems like schools of fish and flocks of birds. These colloids, with off-center repulsive interaction sites,…

Soft Condensed Matter · Physics 2024-10-10 Amir Nourhani

Collective and directed motility or swarming is an emergent phenomenon displayed by many self-organized assemblies of active biological matter such as clusters of embryonic cells during tissue development, cancerous cells during tumor…

Biological Physics · Physics 2016-04-05 Katherine Copenhagen , Ajay Gopinathan

Collective behaviour is a widespread phenomenon in biology, cutting through a huge span of scales, from cell colonies up to bird flocks and fish schools. The most prominent trait of collective behaviour is the emergence of global order:…

Statistical Mechanics · Physics 2015-06-16 A. Attanasi , A. Cavagna , L. Del Castello , I. Giardina , S. Melillo , L. Parisi , O. Pohl , B. Rossaro , E. Shen , E. Silvestri , M. Viale

We present a theory of jellyfish swarm formation and exemplify it with simulations of active Brownian particles. The motivation for our analysis is the phenomenon of jellyfish blooms in the ocean and clustering of jellyfish in tank…

Adaptation and Self-Organizing Systems · Physics 2024-11-26 Erik Gengel , Zafrir Kuplik , Dror Angel , Eyal Heifetz

Clustering of molecules on biological membranes is a widely observed phenomenon. In some cases, such as the clustering of Ras proteins on the membranes of mammalian cells, proper cell signaling is critically dependent on the maintenance of…

Molecular Networks · Quantitative Biology 2019-08-28 Martijn Wehrens , Pieter Rein ten Wolde , Andrew Mugler

We present a phenomenological model of the dynamics of buoyant bubbles in the atmosphere of a cluster of galaxies. The derived equations describe velocity, size, mass, temperature and density of the buoyant bubbles as functions of time…

Astrophysics · Physics 2007-09-13 Georgi Pavlovski , Christian R. Kaiser , Edward C. D. Pope

We present an experimental study on the collective behavior of macroscopic self-propelled particles that are externally excited by light. This property allows testing the system response to the excitation intensity in a very versatile…

Soft Condensed Matter · Physics 2025-09-03 Sára Lévay , Axel Katona , Hartmut Löwen , Raúl Cruz Hidalgo , Iker Zuriguel

A theoretical approach to describing transport of an entire ensemble of clusters with different sizes as a single species in gas has been developed. The major assumption is an existence of local partial chemical equilibrium between the…

Chemical Physics · Physics 2026-05-01 Eugene V. Stepanov , Alexander F. Gutsol

Bacteria are perhaps the simplest living systems capable of complex behaviour involving sensing and coherent, collective behaviour an example of which is the phenomena of swarming on agar surfaces. Two fundamental questions in bacterial…

Influence of surrounding matter on the properties of clusters is considered by an approach combining the methods of statistical and quantum mechanics. A cluster is treated as a bound N-particle system and surrounding matter as thermostat.…

Statistical Mechanics · Physics 2015-06-25 V. I. Yukalov , E. P. Yukalova

Honeybees play an important role in the production of many agricultural crops and in sustaining plant diversity in undisturbed ecosystems. The rapid decline of honeybee populations have sparked great concern worldwide. Previous studies have…

Populations and Evolution · Quantitative Biology 2020-08-12 Komi Messan , Marisabel Rodriguez Messan , Jun Chen , Gloria DeGrandi-Hoffman , Yun Kang

We discuss hydrostatic models of galaxy clusters in which heat diffusion balances radiative cooling. We consider two different sources of diffusion, thermal conduction and turbulent mixing, parameterized by dimensionless coefficients, f and…

Astrophysics · Physics 2007-05-23 Ramesh Narayan , Woong-Tae Kim

A multiphysics modeling approach for heat conduction in metal hydride powders is presented, including particle shape distribution, size distribution, granular packing structure, and effective thermal conductivity. A statistical geometric…

Soft Condensed Matter · Physics 2014-11-03 Kyle C. Smith , Timothy S. Fisher

This is the third in a series of papers studying the astrophysics and cosmology of massive, dynamically relaxed galaxy clusters. Our sample comprises 40 clusters identified as being dynamically relaxed and hot (i.e., massive) in Papers I…

Cosmology and Nongalactic Astrophysics · Physics 2016-01-18 Adam B. Mantz , Steven W. Allen , R. Glenn Morris , Robert W. Schmidt

Over the past few decades, the research community has been interested in the study of multi-agent systems and their emerging collective dynamics. These systems are all around us in nature, like bacterial colonies, fish schools, bird flocks,…

Adaptation and Self-Organizing Systems · Physics 2023-12-12 Gourab Kumar Sar , Dibakar Ghosh

The honey bees play a role of unquestioned relevance in nature and the comprehension of the mechanisms affecting their population dynamic is of fundamental importance. As experimentally documented, the proper development of a colony is…

Populations and Evolution · Quantitative Biology 2017-09-01 Gianluca Gabbriellini

We simulate clustering, phase separation and hexatic ordering in a monolayered suspension of active squirming disks subject to an attractive Lennard-Jones-like pairwise interaction potential, taking hydrodynamic interactions between the…

Soft Condensed Matter · Physics 2016-03-31 Ricard Matas Navarro , Suzanne Fielding