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There are several common ways to encode a tree as a matrix, such as the adjacency matrix, the Laplacian matrix (that is, the infinitesimal generator of the natural random walk), and the matrix of pairwise distances between leaves. Such…

Populations and Evolution · Quantitative Biology 2007-05-23 Frederick A. Matsen , Steven N. Evans

Understanding and predicting how complex systems respond to external perturbations is a central challenge in nonequilibrium statistical physics. Here we consider continuous-time Markov networks, which we subject to perturbations along a…

Statistical Mechanics · Physics 2026-02-25 Robin Bebon , Thomas Speck

We give a simple characterisation of the distribution of the independence number, and equivalently the matching number, of a random tree on $n$ labelled vertices chosen uniformly among the $n^{n-2}$ such trees: Roll an $n$-sided die…

Combinatorics · Mathematics 2021-06-07 Johan Wästlund

For the distributions of finitely many binary random variables, we study the interaction of restrictions of the supports with conditional independence constraints. We prove a generalization of the Hammersley-Clifford theorem for…

Statistics Theory · Mathematics 2024-11-06 Thomas Kahle , Seth Sullivant

We consider Galton-Watson trees associated with a critical offspring distribution and conditioned to have exactly $n$ vertices. These trees are embedded in the real line by affecting spatial positions to the vertices, in such a way that the…

Probability · Mathematics 2007-05-23 Jean-Francois Le Gall

Testing the validity of probabilistic models containing unmeasured (hidden) variables is shown to be a hard task. We show that the task of testing whether models are structurally incompatible with the data at hand, requires an exponential…

Artificial Intelligence · Computer Science 2013-02-28 Dan Geiger , Azaria Paz , Judea Pearl

In a one-parameter model for evolution of random trees, which also includes the Barabasi-Albert random tree, almost sure behavior and the limiting distribution of the degree of a vertex in a fixed position are examined. Results about Polya…

Probability · Mathematics 2010-07-27 Agnes Backhausz

Phylogenetic trees describe the relationships between species in the evolutionary process, and provide information about the rates of diversification. To understand the mechanisms behind macroevolution, we consider a class of multitype…

Populations and Evolution · Quantitative Biology 2024-10-07 Mingqi He , Sophie Hautphenne , Yao-ban Chan

In a rooted tree, we call a vertex {\em balanced} if it is at equal distance from all its descendant leaves. We count balanced vertices in three different tree varieties. For decreasing binary trees, we can prove that the probability that a…

Combinatorics · Mathematics 2017-09-15 Miklos Bona

Joint distributions over many variables are frequently modeled by decomposing them into products of simpler, lower-dimensional conditional distributions, such as in sparsely connected Bayesian networks. However, automatically learning such…

Machine Learning · Computer Science 2013-01-07 Scott Davies , Andrew Moore

We prove asymptotic normality for the number of fringe subtrees isomorphic to any given tree in uniformly random trees with given vertex degrees. As applications, we also prove corresponding results for random labelled trees with given…

Probability · Mathematics 2023-12-08 Gabriel Berzunza Ojeda , Cecilia Holmgren , Svante Janson

We consider a marking procedure of the vertices of a tree where each vertex is marked independently from the others with a probability that depends only on its out-degree. We prove that a critical Galton-Watson tree conditioned on having a…

Probability · Mathematics 2016-04-27 Romain Abraham , Aymen Bouaziz , Jean-François Delmas

Binary trees are fundamental objects in models of evolutionary biology and population genetics. Here, we discuss some of their combinatorial and structural properties as they depend on the tree class considered. Furthermore, the process by…

Populations and Evolution · Quantitative Biology 2021-06-30 Thomas Wiehe

Positivity is one of the three conditions for causal inference from observational data. The standard way to validate positivity is to analyze the distribution of propensity. However, to democratize the ability to do causal inference by…

Machine Learning · Computer Science 2021-11-09 Guy Wolf , Gil Shabat , Hanan Shteingart

Conditional independence and Markov properties are powerful tools allowing expression of multidimensional probability distributions by means of low-dimensional ones. As multidimensional possibilistic models have been studied for several…

Artificial Intelligence · Computer Science 2013-01-18 Jirina Vejnarova

Variable-length Markov chains (VLMCs) are a flexible class of higher-order Markov models that admit a natural representation as context trees. Existing Bayesian methods for specifying prior distributions on tree structures rely on branching…

Methodology · Statistics 2026-05-11 Thiago Paulichen , Victor Freguglia

We describe various sets of conditional independence relationships, sufficient for qualitatively comparing non-vanishing squared partial correlations of a Gaussian random vector. These sufficient conditions are satisfied by several…

Statistics Theory · Mathematics 2018-10-16 Sanjay Chaudhuri

Two closely related discrete probability distributions are introduced. In each case the support is a set of vectors in $\mathbb{R}^n$ obtained from the partitions of the fixed positive integer $n$. These distributions arise naturally when…

Combinatorics · Mathematics 2021-07-09 Andrew V. Sills

We show that, for any graph or matroid, there is a tree that simultaneously distinguishes its maximal tangles, and, for each maximal tangle $\mathcal{T}$ that satisfies an additional robustness condition, displays all of the non-trivial…

Combinatorics · Mathematics 2016-05-23 Ben Clark

We consider the notion of the matrix (tensor) distribution of a measurable function of several variables. On the one hand, it is an invariant of this function with respect to a certain group of transformations of variables; on the other…

Dynamical Systems · Mathematics 2023-11-03 A. Vershik