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Recent developments in high throughput profiling of individual neurons have spurred data driven exploration of the idea that there exist natural groupings of neurons referred to as cell types. The promise of this idea is that the immense…

Neurons and Cognition · Quantitative Biology 2019-11-14 Rohan Gala , Nathan Gouwens , Zizhen Yao , Agata Budzillo , Osnat Penn , Bosiljka Tasic , Gabe Murphy , Hongkui Zeng , Uygar Sümbül

Previous research on word embeddings has shown that sparse representations, which can be either learned on top of existing dense embeddings or obtained through model constraints during training time, have the benefit of increased…

Computation and Language · Computer Science 2018-09-26 Valentin Trifonov , Octavian-Eugen Ganea , Anna Potapenko , Thomas Hofmann

Sparse autoencoders (SAEs) have emerged as a powerful tool for interpreting large language models (LLMs) by decomposing token activations into combinations of human-understandable features. While SAEs provide crucial insights into LLM…

Machine Learning · Computer Science 2025-11-11 Zhen Xu , Zhen Tan , Song Wang , Kaidi Xu , Tianlong Chen

Relationship inference from sparse data is an important task with applications ranging from product recommendation to drug discovery. A recently proposed linear model for sparse matrix completion has demonstrated surprising advantage in…

Machine Learning · Computer Science 2024-03-14 Aleksandar Poleksic

Deep linear networks trained with gradient descent yield low rank solutions, as is typically studied in matrix factorization. In this paper, we take a step further and analyze implicit rank regularization in autoencoders. We show greedy…

Machine Learning · Computer Science 2021-07-06 Shih-Yu Sun , Vimal Thilak , Etai Littwin , Omid Saremi , Joshua M. Susskind

Language models can behave in unexpected and unsafe ways, and so it is valuable to monitor their outputs. Internal activations of language models encode additional information that could be useful for this. The baseline approach for…

Machine Learning · Computer Science 2025-04-30 Henk Tillman , Dan Mossing

Autoencoders have been used for finding interpretable and disentangled features underlying neural network representations in both image and text domains. While the efficacy and pitfalls of such methods are well-studied in vision, there is a…

Machine Learning · Computer Science 2025-02-06 Abhinav Menon , Manish Shrivastava , David Krueger , Ekdeep Singh Lubana

Sparse Auto-Encoders (SAEs) are commonly employed in mechanistic interpretability to decompose the residual stream into monosemantic SAE latents. Recent work demonstrates that perturbing a model's activations at an early layer results in a…

Machine Learning · Computer Science 2024-11-19 Giorgi Giglemiani , Nora Petrova , Chatrik Singh Mangat , Jett Janiak , Stefan Heimersheim

Sparse autoencoders (SAEs) have become an important tool for analyzing and interpreting the activation space of transformer-based language models (LMs). However, SAEs suffer several shortcomings that diminish their utility and internal…

Computation and Language · Computer Science 2025-06-27 Ryosuke Takahashi , Tatsuro Inaba , Kentaro Inui , Benjamin Heinzerling

Recent research in the design of end to end communication system using deep learning has produced models which can outperform traditional communication schemes. Most of these architectures leveraged autoencoders to design the encoder at the…

Information Theory · Computer Science 2020-01-28 Vishnu Raj , Sheetal Kalyani

Unsupervised learning is of growing interest because it unlocks the potential held in vast amounts of unlabelled data to learn useful representations for inference. Autoencoders, a form of generative model, may be trained by learning to…

Computer Vision and Pattern Recognition · Computer Science 2018-01-08 Antonia Creswell , Anil Anthony Bharath

Scientific archives now contain hundreds of petabytes of data across genomics, ecology, climate, and molecular biology that could reveal undiscovered patterns if systematically analyzed at scale. Large-scale, weakly-supervised datasets in…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Samuel Stevens , Jacob Beattie , Tanya Berger-Wolf , Yu Su

Enhanced modeling of microlensing variations in light curves of strongly lensed quasars improves measurements of cosmological time delays, the Hubble Constant, and quasar structure. Traditional methods for modeling extra-galactic…

Instrumentation and Methods for Astrophysics · Physics 2025-01-03 Somayeh Khakpash , Federica Bianco , Georgios Vernardos , Gregory Dobler , Charles Keeton

Parameterized mathematical models play a central role in understanding and design of complex information systems. However, they often cannot take into account the intricate interactions innate to such systems. On the contrary, purely…

Signal Processing · Electrical Eng. & Systems 2019-12-02 Shahin Khobahi , Mojtaba Soltanalian

Bottleneck autoencoders have been actively researched as a solution to image compression tasks. However, we observed that bottleneck autoencoders produce subjectively low quality reconstructed images. In this work, we explore the ability of…

Computer Vision and Pattern Recognition · Computer Science 2018-01-25 Yijing Watkins , Mohammad Sayeh , Oleksandr Iaroshenko , Garrett Kenyon

It is now well established that sparse signal models are well suited to restoration tasks and can effectively be learned from audio, image, and video data. Recent research has been aimed at learning discriminative sparse models instead of…

Computer Vision and Pattern Recognition · Computer Science 2009-09-29 Julien Mairal , Francis Bach , Jean Ponce , Guillermo Sapiro , Andrew Zisserman

Current sparse autoencoder (SAE) approaches to neural network interpretability assume that activations can be decomposed through linear superposition into sparse, interpretable features. Despite high reconstruction fidelity, SAEs…

Neurons and Cognition · Quantitative Biology 2025-12-10 Omar Claflin

We present a comprehensive framework for structured sparse coding and modeling extending the recent ideas of using learnable fast regressors to approximate exact sparse codes. For this purpose, we develop a novel block-coordinate proximal…

Machine Learning · Computer Science 2012-06-22 Alex Bronstein , Pablo Sprechmann , Guillermo Sapiro

Sparse Autoencoders (SAEs) are a promising approach for extracting neural network representations by learning a sparse and overcomplete decomposition of the network's internal activations. However, SAEs are traditionally trained considering…

Machine Learning · Computer Science 2025-04-02 Jeffrey Olmo , Jared Wilson , Max Forsey , Bryce Hepner , Thomas Vin Howe , David Wingate

Autoencoders are a prominent model in many empirical branches of machine learning and lossy data compression. However, basic theoretical questions remain unanswered even in a shallow two-layer setting. In particular, to what degree does a…

Machine Learning · Computer Science 2024-02-08 Kevin Kögler , Alexander Shevchenko , Hamed Hassani , Marco Mondelli