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We propose a unified view on two widely used data visualization techniques: Self-Organizing Maps (SOMs) and Stochastic Neighbor Embedding (SNE). We show that they can both be derived from a common mathematical framework. Leveraging this…

Machine Learning · Computer Science 2022-05-04 Thibaut Kulak , Anthony Fillion , François Blayo

Dimensionality reduction methods, also known as projections, are frequently used for exploring multidimensional data in machine learning, data science, and information visualization. Among these, t-SNE and its variants have become very…

Machine Learning · Computer Science 2019-02-22 Mateus Espadoto , Nina S. T. Hirata , Alexandru C. Telea

This paper proposes a new dimensionality reduction algorithm named branching embedding (BE). It converts a dendrogram to a two-dimensional scatter plot, and visualizes the inherent structures of the original high-dimensional data. Since the…

Machine Learning · Statistics 2018-05-08 Makito Oku

We propose a visualization technique that utilizes neural network embeddings and a generative network to reconstruct original data. This method allows for independent manipulation of individual image embeddings through its non-parametric…

Machine Learning · Computer Science 2023-02-22 Halid Ziya Yerebakan , Gerardo Hermosillo Valadez

Spectral Embedding (SE) has often been used to map data points from non-linear manifolds to linear subspaces for the purpose of classification and clustering. Despite significant advantages, the subspace structure of data in the original…

Computer Vision and Pattern Recognition · Computer Science 2023-05-16 Hira Yaseen , Arif Mahmood

Data visualisation helps understanding data represented by multiple variables, also called features, stored in a large matrix where individuals are stored in lines and variable values in columns. These data structures are frequently called…

Human-Computer Interaction · Computer Science 2022-07-25 Haseeb Younis , Paul Trust , Rosane Minghim

Learning discriminative image feature embeddings is of great importance to visual recognition. To achieve better feature embeddings, most current methods focus on designing different network structures or loss functions, and the estimated…

Computer Vision and Pattern Recognition · Computer Science 2019-08-15 Suichan Li , Dapeng Chen , Bin Liu , Nenghai Yu , Rui Zhao

Majority of the current dimensionality reduction or retrieval techniques rely on embedding the learned feature representations onto a computable metric space. Once the learned features are mapped, a distance metric aids the bridging of gaps…

Computer Vision and Pattern Recognition · Computer Science 2018-10-17 Muhammad Kamran Janjua , Shah Nawaz , Alessandro Calefati , Ignazio Gallo

SpectralNet is a graph clustering method that uses neural network to find an embedding that separates the data. So far it was only used with $k$-nn graphs, which are usually constructed using a distance metric (e.g., Euclidean distance).…

Machine Learning · Computer Science 2023-02-28 Mashaan Alshammari , John Stavrakakis , Adel F. Ahmed , Masahiro Takatsuka

We present neuron embeddings, a representation that can be used to tackle polysemanticity by identifying the distinct semantic behaviours in a neuron's characteristic dataset examples, making downstream manual or automatic interpretation…

Machine Learning · Computer Science 2024-11-14 Alex Foote

We present GraphTSNE, a novel visualization technique for graph-structured data based on t-SNE. The growing interest in graph-structured data increases the importance of gaining human insight into such datasets by means of visualization.…

Machine Learning · Computer Science 2019-04-24 Yao Yang Leow , Thomas Laurent , Xavier Bresson

The tsNET algorithm utilizes t-SNE to compute high-quality graph drawings, preserving the neighborhood and clustering structure. We present three fast algorithms for reducing the time complexity of tsNET algorithm from O(nm) time to O(n log…

Data Structures and Algorithms · Computer Science 2025-09-25 Amyra Meidiana , Seok-Hee Hong , Kwan-Liu Ma

We use graphical methods to probe neural nets that classify images. Plots of t-SNE outputs at successive layers in a network reveal increasingly organized arrangement of the data points. They can also reveal how a network can diminish or…

Machine Learning · Computer Science 2021-07-28 Christopher R. Hoyt , Art B. Owen

Stochastic Neighbor Embedding (SNE) algorithms like UMAP and tSNE often produce visualizations that do not preserve the geometry of noisy and high dimensional data. In particular, they can spuriously separate connected components of the…

Machine Learning · Computer Science 2025-09-05 Tristan Luca Saidi , Abigail Hickok , Bastian Rieck , Andrew J. Blumberg

Sparse embeddings of data form an attractive class due to their inherent interpretability: Every dimension is tied to a term in some vocabulary, making it easy to visually decipher the latent space. Sparsity, however, poses unique…

Data Structures and Algorithms · Computer Science 2025-09-30 Sebastian Bruch , Franco Maria Nardini , Cosimo Rulli , Rossano Venturini

Most existing graph visualization methods based on dimension reduction are limited to relatively small graphs due to performance issues. In this work, we propose a novel dimension reduction method for graph visualization, called…

Machine Learning · Computer Science 2023-10-18 Xinyu Li , Yao Xiao , Yuchen Zhou

We introduce space-efficient plane-sweep algorithms for basic planar geometric problems. It is assumed that the input is in a read-only array of $n$ items and that the available workspace is $\Theta(s)$ bits, where $\lg n \leq s \leq n…

Data Structures and Algorithms · Computer Science 2016-04-25 Amr Elmasry , Frank Kammer

Cluster visualization is an essential task for nonlinear dimensionality reduction as a data analysis tool. It is often believed that Student t-Distributed Stochastic Neighbor Embedding (t-SNE) can show clusters for well clusterable data,…

Machine Learning · Computer Science 2021-10-07 Zhirong Yang , Yuwei Chen , Jukka Corander

Attributed networks are ubiquitous since a network often comes with auxiliary attribute information e.g. a social network with user profiles. Attributed Network Embedding (ANE) has recently attracted considerable attention, which aims to…

Social and Information Networks · Computer Science 2019-06-07 Chengbin Hou , Shan He , Ke Tang

Hyperbolic space can naturally embed hierarchies that often exist in real-world data and semantics. While high-dimensional hyperbolic embeddings lead to better representations, most hyperbolic models utilize low-dimensional embeddings, due…

Machine Learning · Computer Science 2022-05-17 Yunhui Guo , Haoran Guo , Stella Yu
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