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Scholarly knowledge graphs are valuable sources of information in several research fields. Despite the number of existing datasets related to publications and researchers, resource quality, coverage and accessibility are still limited. This…

Digital Libraries · Computer Science 2022-03-18 Laura Pollacci

In recent years, funding agencies and journals increasingly advocate for open science practices (e.g. data and method sharing) to improve the transparency, access, and reproducibility of science. However, quantifying these practices at…

Digital Libraries · Computer Science 2023-10-06 Hancheng Cao , Jesse Dodge , Kyle Lo , Daniel A. McFarland , Lucy Lu Wang

Current research in biology heavily depends on the availability and efficient use of information. In order to build new knowledge, various sources of biological data must often be combined. Semantic Web technologies, which provide a common…

Quantitative Methods · Quantitative Biology 2009-02-19 Claude Pasquier

Hyperlinks are an essential feature of the World Wide Web. They are especially important for online encyclopedias such as Wikipedia: an article can often only be understood in the context of related articles, and hyperlinks make it easy to…

Social and Information Networks · Computer Science 2015-03-17 Robert West , Ashwin Paranjape , Jure Leskovec

Storing data is easy, but finding and using data is not. It is desirable that the data is stored in a structured format, which can be preserved and retrieved in future. Creating Metadata for the data is one way of creating structured data…

Information Theory · Computer Science 2011-01-04 Ranjeet Devarakonda , Giri Palanisamy , Jim Green

As sequencing technologies become more affordable and genomic databases expand continuously, the reuse of publicly available sequencing data emerges as a powerful strategy for studying microbial pathogens. Indeed, raw sequencing reads…

Quantitative Methods · Quantitative Biology 2025-05-16 Damien Richard , Nils Poulicard

We present CitNetExplorer, a new software tool for analyzing and visualizing citation networks of scientific publications. CitNetExplorer can for instance be used to study the development of a research field, to delineate the literature on…

Digital Libraries · Computer Science 2014-04-23 Nees Jan van Eck , Ludo Waltman

Large, open datasets can accelerate ecological research, particularly by enabling researchers to develop new insights by reusing datasets from multiple sources. However, to find the most suitable datasets to combine and integrate,…

Digital Libraries · Computer Science 2025-10-07 Zehao Lu , Thijs L van der Plas , Parinaz Rashidi , W Daniel Kissling , Ioannis N Athanasiadis

Citation graphs are fundamental tools for modeling scientific structure, but are often fragmented due to missing citations of scientifically connected articles. To address this issue, we propose a computationally efficient hybrid framework…

Ontologies are widely used for representing domain knowledge and meta data, playing an increasingly important role in Information Systems, the Semantic Web, Bioinformatics and many other domains. However, logical reasoning that ontologies…

Artificial Intelligence · Computer Science 2025-04-08 Jiaoyan Chen , Olga Mashkova , Fernando Zhapa-Camacho , Robert Hoehndorf , Yuan He , Ian Horrocks

Science advances not only through the accumulation of facts but also through the evolution of tools. Crucially, tools are rarely used in isolation. They form tool portfolios, combinations shaped by a discipline's workflows and analytical…

Digital Libraries · Computer Science 2026-04-28 Zhouming Wu , Dakota Murray

A key assumption in multi-task learning is that at the inference time the multi-task model only has access to a given data point but not to the data point's labels from other tasks. This presents an opportunity to extend multi-task learning…

Machine Learning · Computer Science 2023-03-15 Kaidi Cao , Jiaxuan You , Jure Leskovec

The Linked Open Data practice has led to a significant growth of structured data on the Web in the last decade. Such structured data describe real-world entities in a machine-readable way, and have created an unprecedented opportunity for…

Computation and Language · Computer Science 2022-06-27 Ziqi Zhang , Xingyi Song

The overwhelming amount of available scholarly literature in the life sciences poses significant challenges to scientists wishing to keep up with important developments related to their research, but also provides a useful resource for the…

Quantitative Methods · Quantitative Biology 2011-03-29 Huijun Wang , Ying Ding , Jie Tang , Xiao Dong , Bing He , Judy Qiu , David J. Wild

The growing need to manage and exploit the proliferation of online data sources is opening up new opportunities for bringing people closer to the resources they need. For instance, consider a recommendation service through which researchers…

Information Retrieval · Computer Science 2011-06-02 C. Basu , W. W. Cohen , H. Hirsh , C. Nevill-Manning

Grey literature is essential to software engineering research as it captures practices and decisions that rarely appear in academic venues. However, collecting and assessing it at scale remains difficult because of their heterogeneous…

In the context of the ATLAS experiment there is growing evidence of the importance of different kinds of Meta-data including all the important details of the detector and data acquisition that are vital for the analysis of the acquired…

This paper is about a better understanding on the structure and dynamics of science and the usage of these insights for compensating the typical problems that arises in metadata-driven Digital Libraries. Three science model driven retrieval…

Information Retrieval · Computer Science 2011-01-11 Philipp Mayr , Philipp Schaer , Peter Mutschke

Metadata-the machine-readable descriptions of the data-are increasingly seen as crucial for describing the vast array of biomedical datasets that are currently being deposited in public repositories. While most public repositories have firm…

We report evidence of an undocumented method to manipulate citation counts involving 'sneaked' references. Sneaked references are registered as metadata for scientific articles in which they do not appear. This manipulation exploits trusted…

Digital Libraries · Computer Science 2024-05-07 Lonni Besançon , Guillaume Cabanac , Cyril Labbé , Alexander Magazinov