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A range of a priori hypotheses about the evolution of modern and archaic genomes are further evaluated and tested. In addition to the well-known splits/introgressions involving Neanderthal genes into out-of- Africa people, or Denisovan…

Populations and Evolution · Quantitative Biology 2013-12-31 Peter J. Waddell

A notable feature of the elephant trunk is the pronounced wrinkling that enables its great flexibility. Here, we devise a general mathematical model that accounts for the characteristic skin wrinkles formed during morphogenesis in the…

Biological Physics · Physics 2025-02-07 Yang Liu , Alain Goriely , L. Angela Mihai

Divergence time estimation requires the reconciliation of two major sources of data. These are fossil and/or biogeographic evidence that give estimates of the absolute age of nodes (ancestors) and molecular estimates that give us estimates…

Populations and Evolution · Quantitative Biology 2008-12-31 Peter J Waddell

Soft, disordered, micro-structured materials are ubiquitous in nature and industry, and are different from ordinary fluids or solids, with unusual, interesting static and flow properties. The transition from fluid to solid -at the so-called…

Soft Condensed Matter · Physics 2016-07-12 Nishant Kumar , Stefan Luding

Food webs with intraguild predation (IGP) are widespread in natural habitats. Their adaptation and resilience behaviour is principal for understanding restructuring of ecological communities. In spite of the importance of IGP food webs…

Populations and Evolution · Quantitative Biology 2012-04-16 E. Shchekinova , M. G. J. Löder , M. Boersma , K. H. Wiltshire

Previous observations of Phobos and Deimos, the moons of Mars, have improved our understanding of these small bodies. However, their formation and composition remain poorly constrained. Physical and spectral properties suggest that Phobos…

In models for the evolution of predation from initially purely competitive species interactions, the propensity of predation is most often assumed to be a direct consequence of the relative morphological and physiological traits of…

Populations and Evolution · Quantitative Biology 2023-07-11 Yaroslav Ispolatov , Carlos Doebeli , Michael Doebeli

Elongation is a fundament process in amyloid fiber growth, which is normally characterized by a linear relationship between the fiber elongation rate and the monomer concentration. However, in high concentration regions, a sub-linear…

Quantitative Methods · Quantitative Biology 2020-11-13 Liu Hong , Xizhou Liu , Thomas C. T. Michaels , Tuomas P. J. Knowles

Food webs have been found to exhibit remarkable motif profiles, patterns in the relative prevalences of all possible three-species sub-graphs, and this has been related to ecosystem properties such as stability and robustness. Analysing 46…

Populations and Evolution · Quantitative Biology 2016-09-15 Janis Klaise , Samuel Johnson

Avian prestin is sensitive to membrane thickness as much as mammalian prestin, which undergoes conformational transitions in membrane area and thereby drives length changes of the cylindrical cell body of outer hair cells. The membrane…

Biological Physics · Physics 2023-07-06 Kuni H Iwasa

Biological networks have evolved to be highly functional within uncertain environments while remaining extremely adaptable. One of the main contributors to the robustness and evolvability of biological networks is believed to be their…

Molecular Networks · Quantitative Biology 2008-02-14 Arend Hintze , Christoph Adami

A central goal in ecology is to understand how biodiversity is maintained. Previous theoretical works have employed the rock-paper-scissors (RPS) game as a toy model, demonstrating that population mobility is crucial in determining the…

Populations and Evolution · Quantitative Biology 2026-05-21 Kaiwen Jiang , Chenyang Zhao , Shengfeng Deng , Weiran Cai , Jiqiang Zhang , Li Chen

Global food security depends on predicting crop responses to climate variability, yet process based crop models remain too computationally expensive for large scale exploration of genotype and environment interactions. Here we develop a…

Computational Engineering, Finance, and Science · Computer Science 2026-05-25 Mojdeh Saadati , Juan Panelo , Gustavo Visentini , Soumik Sarkar , Carlos Messina , Baskar Ganapathysubramanian

Well protected human and laboratory animal populations with abundant resources are evolutionary unprecedented. Physical approach, which takes advantage of their extensively quantified mortality, establishes that its dominant fraction yields…

Quantitative Methods · Quantitative Biology 2007-05-23 Mark Ya. Azbel'

We present a machine learning approach that leverages persistent homology to classify bacterial flagellar motors into two functional states: rotated and stalled. By embedding protein structural data into a topological framework, we extract…

Biomolecules · Quantitative Biology 2025-12-19 Zakaria Lamine , Abdelatif Hafid , Mohamed Rahouti

Background. Organisms use a variety of mechanisms to protect themselves against perturbations. For example, repair mechanisms fix damage, feedback loops keep homeostatic systems at their setpoints, and biochemical filters distinguish signal…

Populations and Evolution · Quantitative Biology 2011-12-14 Steven A. Frank

Swallowing disorders deteriorate significantly the quality of life and can be lifethreatening. Texture modification using shear thinning food thickeners have proven effective in the management of dysphagia. Some studies have recently…

Tissues and Organs · Quantitative Biology 2020-01-23 Marco Marconati , Marco Ramaioli

One of the central problems in animal and plant developmental biology is deciphering how chemical and mechanical signals interact within a tissue to produce organs of defined size, shape and function. Cell walls in plants impose a unique…

The discovery of Paranthropus deyiremeda in 3.3-3.5 million year old fossil sites in Afar (Haile-Selassie, 2015), together with 30% of the gorilla genome showing lineage sorting between humans and chimpanzees (Scally, 2012), and a NUMT…

Populations and Evolution · Quantitative Biology 2018-08-22 Johan Nygren

The evolution of various competing cell types in tissues, and the resulting persistent tissue population, is studied numerically and analytically in a particle-based model of active tissues. Mutations change the properties of cells in…

Populations and Evolution · Quantitative Biology 2024-06-03 Tobias Büscher , Nirmalendu Ganai , Gerhard Gompper , Jens Elgeti