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Entangled states are ubiquitous amongst fibrous materials, whether naturally occurring (keratin, collagen, DNA) or synthetic (nanotube assemblies, elastane). A key mechanical characteristic of these systems is their ability to reorganise in…

Sigmoid growth models are often used to study population dynamics. The size of a population at equilibrium commonly depends explicitly on the availability of resources, such as an energy or nutrient source, which is not explicit in standard…

Populations and Evolution · Quantitative Biology 2025-03-17 Elise Mills , Graeme F. Clark , Matthew J. Simpson , Mark Baird , Matthew P. Adams

We study a mathematical model inspired by a common scenario in northern Patagonia consisting of humans and their livestock living together with native wildlife. The main production system in this area is sheep farming, which due to wrong…

Populations and Evolution · Quantitative Biology 2019-02-01 Y. C. Daza C. , M. F. Laguna , J. A. Monjeau , G. Abramson

We study the dynamics of a seeding experiment where a fibrous scaffold material is colonized by two types of cell populations. The specific application that we have in mind is related to the idea of meniscus tissue regeneration. In order to…

The question what determines the structure of natural food webs has been listed among the nine most important unanswered questions in ecology. It arises naturally from many problems related to ecosystem stability and resilience. The…

Populations and Evolution · Quantitative Biology 2009-09-29 A. G. Rossberg , H. Matsuda , T. Amemiya , K. Itoh

The physical and bio-mechanical principles that govern undulatory movement on wet surfaces have important applications in physiology, physics, and engineering. The nematode {\it C. elegans}, with its highly stereotypical and functionally…

Fluid Dynamics · Physics 2015-06-03 Xiao N. Shen , J. Sznitman , P. Krajacic , T. Lamitina , P. E. Arratia

Metagenomic studies have increasingly utilized sequencing technologies in order to analyze DNA fragments found in environmental samples.One important step in this analysis is the taxonomic classification of the DNA fragments. Conventional…

Genomics · Quantitative Biology 2020-02-11 Andreas Georgiou , Vincent Fortuin , Harun Mustafa , Gunnar Rätsch

Many animals in their natural habitat exhibit collective motion and form complex patterns to tackle environmental difficulties. Several physical and biological factors, such as animal motility, population densities, and chemical cues, play…

Biological Physics · Physics 2019-06-25 Esin Demir , Y. Ilker Yaman , Askin Kocabas

Eumelanin is regarded to be an attractive candidate material for biomedical applications. Despite many theoretical studies exploring the structure of eumelanin, an exact mapping of the energetic landscape of the very large phase space of…

Chemical Physics · Physics 2019-10-16 Oleg Sapunkov , Abhishek Khetan , Vikram Pande , Venkatasubramanian Viswanathan

Common gastropods such as snails crawl on a solid substrate by propagating muscular waves of shear stress on a viscoelastic mucus. Producing the mucus accounts for the largest component in the gastropod's energy budget, more than twenty…

Soft Condensed Matter · Physics 2008-10-02 Eric Lauga , A. E. Hosoi

Deep phenotyping is an emerging conceptual paradigm and experimental approach that seeks to measure many aspects of phenotypes and link them to understand the underlying biology. Successful deep phenotyping has mostly been applied in…

Quantitative Methods · Quantitative Biology 2019-04-03 Nan Xu , Dhaval S. Patel , Hang Lu

Based upon apical growth and hyphal branching, the two main processes that drive the growth pattern of a fungal network, we propose here a two-dimensions simulation based on a binary-tree modelling allowing us to extract the main…

The problem of unicellular-multicellular transition is one of the main issues that is discussing in evolutionary biology. In [1] the fitness of a colony of cells is considered in terms of its two basic components, viability and fecundity.…

Populations and Evolution · Quantitative Biology 2015-06-08 Fuad Aleskerov , Denis Tverskoy

Using density functional theory calculations, many researchers have predicted that various tungsten-nitride compounds WN$_x$ ($x$ > 1) will be "ultra-compressible" or "superhard", $i.e.$ as hard as or harder than diamond. These compounds…

Materials Science · Physics 2015-06-11 Michael J. Mehl , Daniel Finkenstadt , Christian Dane , Gus L. W. Hart , Stefano Curtarolo

Species sharing a prey or a predator species may go extinct due to exploitative or apparent competition. We examine whether evolution of the shared species acts as a coexistence mechanism and to what extent the answer depends on the genetic…

Populations and Evolution · Quantitative Biology 2019-02-12 Sebastian J. Schreiber , Swati Patel , Casey terHorst

Body size or mass is one of the main factors underlying food webs structure. A large number of evolutionary models have shown that indeed, the adaptive evolution of body size (or mass) can give rise to hierarchically organised trophic…

Populations and Evolution · Quantitative Biology 2021-08-27 Coralie Fritsch , Sylvain Billiard , Nicolas Champagnat

The evolution of biological morphology is critical for understanding the diversity of the natural world, yet traditional analyses often involve subjective biases in the selection and coding of morphological traits. This study employs deep…

Populations and Evolution · Quantitative Biology 2026-02-10 Jiao Sun

The organization of the axonal cytoskeleton is a key determinant of the normal function of an axon, which is a long thin projection away from a neuron. Under normal conditions two axonal cytoskeletal polymers microtubules and neurofilaments…

Cell Behavior · Quantitative Biology 2016-02-17 Chuan Xue , Blerta Shtylla , Anthony Brown

Efficient pattern separation in dentate gyrus plays an important role in storing information in the hippocampus. Current knowledge of the structure and function of the hippocampus, entorhinal cortex and dentate gyrus, in pattern separation…

Neurons and Cognition · Quantitative Biology 2018-08-02 Faramarz Faghihi , Homa Samani , Ahmed A. Moustafa

Proteins are the most important biomolecules for living organisms. The understanding of protein structure, function, dynamics and transport is one of most challenging tasks in biological science. In the present work, persistent homology is,…

Biomolecules · Quantitative Biology 2014-12-10 Kelin Xia , Guo-Wei Wei
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