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State space models (SSMs) have high performance on long sequence modeling but require sophisticated initialization techniques and specialized implementations for high quality and runtime performance. We study whether a simple alternative…

Machine Learning · Computer Science 2023-02-15 Daniel Y. Fu , Elliot L. Epstein , Eric Nguyen , Armin W. Thomas , Michael Zhang , Tri Dao , Atri Rudra , Christopher Ré

We present a novel acceleration technique for improving the convergence of source iteration for discrete ordinates transport calculations. Our approach uses the idea of the dynamic mode decomposition (DMD) to estimate the slowly decaying…

Computational Physics · Physics 2018-12-14 Ryan G. McClarren , Terry S. Haut

Single-molecule localization microscopy (SMLM) surpasses the diffraction limit, achieving subcellular resolution. Traditional SMLM analysis methods often rely on point spread function (PSF) model fitting, limiting the application of complex…

Quantitative Methods · Quantitative Biology 2024-10-04 Tingdan Luo

Given multiple time series data, how can we efficiently find latent patterns in an arbitrary time range? Singular value decomposition (SVD) is a crucial tool to discover hidden factors in multiple time series data, and has been used in many…

Numerical Analysis · Computer Science 2018-12-21 Jun-Gi Jang , Dongjin Choi , Jinhong Jung , U Kang

Support vector machines (SVM) and other kernel techniques represent a family of powerful statistical classification methods with high accuracy and broad applicability. Because they use all or a significant portion of the training data,…

Machine Learning · Statistics 2023-01-31 Peter Mills

We introduce efficient $(1+\varepsilon)$-approximation algorithms for the binary matrix factorization (BMF) problem, where the inputs are a matrix $\mathbf{A}\in\{0,1\}^{n\times d}$, a rank parameter $k>0$, as well as an accuracy parameter…

Data Structures and Algorithms · Computer Science 2023-06-06 Ameya Velingker , Maximilian Vötsch , David P. Woodruff , Samson Zhou

Tucker decomposition is proposed to reduce the memory requirement of the far-fields in the fast multipole method (FMM)-accelerated surface integral equation simulators. It is particularly used to compress the far-fields of FMM groups, which…

Computational Physics · Physics 2021-04-09 Cheng Qian , Mingyu Wang , Abdulkadir C. Yucel

This paper proposes a virtual element method (VEM) combined with a second-order implicit-explicit scheme based on the scalar auxiliary variable (SAV) method for the incompressible magnetohydrodynamics (MHD) equations. We employ the BDF2…

Numerical Analysis · Mathematics 2024-10-25 Xiaojing Dong , Yunqing Huang , Tianwen Wang

There has been an increasing interest in developing efficient immersed boundary method (IBM) based on Cartesian grids, recently in the context of high-order methods. IBM based on volume penalization is a robust and easy to implement method…

Numerical Analysis · Mathematics 2021-07-22 Jiaqing Kou , Esteban Ferrer

Fast and accurate numerical simulations are crucial for designing large-scale geological carbon storage projects ensuring safe long-term CO2 containment as a climate change mitigation strategy. These simulations involve solving numerous…

Mathematical Software · Computer Science 2024-08-08 Ryuichi Sai , Francois P. Hamon , John Mellor-Crummey , Mauricio Araya-Polo

This paper presents an innovative approach leveraging Spectrally Efficient Frequency Division Multiplexing (SEFDM) with enhancements, including Frequency Domain Cyclic Prefix (FDCP) and Modified Non-Linear (MNL) acceleration, to address…

Signal Processing · Electrical Eng. & Systems 2024-02-07 Mahdi Shamsi , Farokh Marvasti

The emerging mobile devices in this era of internet-of-things (IoT) require a dedicated processor to enable computationally intensive applications such as neuromorphic computing and signal processing. Vector-by-matrix multiplication (VMM)…

Signal Processing · Electrical Eng. & Systems 2020-01-08 Shubham Sahay , Mohammad Bavandpour , Mohammad Reza Mahmoodi , Dmitri Strukov

This work presents an approach for automating the discretization and approximation procedures in constructing digital representations of composites from Micro-CT images featuring intricate microstructures. The proposed method is guided by…

Machine Learning · Computer Science 2025-09-11 Yanran Wang , Jonghyuk Baek , Yichun Tang , Jing Du , Mike Hillman , J. S. Chen

Fast Multipole Methods (FMM) are a fundamental operation for the simulation of many physical problems. The high performance design of such methods usually requires to carefully tune the algorithm for both the targeted physics and the…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-06-04 Emmanuel Agullo , Béranger Bramas , Olivier Coulaud , Eric Darve , Matthias Messner , Takahashi Toru

Recent advances in multimodal large language models (MLLMs) have enabled impressive progress in vision-language understanding, yet their high computational cost limits deployment in resource-constrained scenarios such as personal…

Computer Vision and Pattern Recognition · Computer Science 2026-04-08 Quoc-Huy Trinh , Mustapha Abdullahi , Bo Zhao , Debesh Jha

We introduce jaxFMM, an open-source, adaptive, highly parallel point-charge Fast Multipole Method implementation for the Laplace kernel written in JAX. It is based on a non-uniform refinement strategy, which results in extremely concise and…

Computational Physics · Physics 2025-11-20 Robert Kraft , Florian Bruckner , Dieter Suess , Claas Abert

Compression algorithms are important for data oriented tasks, especially in the era of Big Data. Modern processors equipped with powerful SIMD instruction sets, provide us an opportunity for achieving better compression performance.…

Information Retrieval · Computer Science 2015-04-15 Wayne Xin Zhao , Xudong Zhang , Daniel Lemire , Dongdong Shan , Jian-Yun Nie , Hongfei Yan , Ji-Rong Wen

String kernels are attractive data analysis tools for analyzing string data. Among them, alignment kernels are known for their high prediction accuracies in string classifications when tested in combination with SVM in various applications.…

Machine Learning · Computer Science 2019-11-15 Yasuo Tabei , Yoshihiro Yamanishi , Rasmus Pagh

Recently, a new polynomial basis over binary extension fields was proposed such that the fast Fourier transform (FFT) over such fields can be computed in the complexity of order $\mathcal{O}(n\lg(n))$, where $n$ is the number of points…

Information Theory · Computer Science 2016-08-16 Sian-Jheng Lin , Tareq Y. Al-Naffouri , Yunghsiang S. Han

Singular value decomposition (SVD) is widely used for dimensionality reduction and noise suppression, and it plays a pivotal role in numerous scientific and engineering applications. As the dimensions of the matrix grow rapidly, the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-26 Fangqiang Du , Sixuan Chong , Zixuan Huang , Rui Qin , Fengnan Mi , Caibao Hu , Jiangang Chen