Related papers: The motif problem
An arrangement of pseudocircles is a collection of simple closed curves on the sphere or in the plane such that any two of the curves are either disjoint or intersect in exactly two crossing points. We call an arrangement intersecting if…
Given a graph, the general problem to cover the maximum number of vertices by a collection of vertex-disjoint long paths seemingly escapes from the literature. A path containing at least $k$ vertices is considered long. When $k \le 3$, the…
Recent advances in reasoning models have demonstrated significant improvements in accuracy by employing detailed and comprehensive reasoning processes. However, generating these lengthy reasoning sequences is computationally expensive and…
Lineage tracing, the tracking of living cells as they move and divide, is a central problem in biological image analysis. Solutions, called lineage forests, are key to understanding how the structure of multicellular organisms emerges. We…
We consider various problems related to finding points in $\Q^{2}$ and in $\Q^{3}$ which lie at rational distance from the vertices of some specified geometric object, for example, a square or rectangle in $\Q^{2}$, and a cube or…
Polygon inclusion problems have been studied extensively in geometric optimization. In this paper, we consider the variant of computing the maximum area parallelograms (MAPs) and all the locally maximal area parallelograms (LMAPs) in a…
We study the problem of edge partitioning, where the goal is to partition the edge set of a graph into several parts. The replication factor of a vertex $v$ is the number of parts that contain edges incident to $v$. The goal is to minimize…
The purpose of this note is to study configurations of lines in projective planes over arbitrary fields having the maximal number of intersection points where three lines meet. We give precise conditions on ground fields F over which such…
Polynomial systems occur in many areas of science and engineering. Unlike general nonlinear systems, the algebraic structure enables to compute all solutions of a polynomial system. We describe our massive parallel predictor-corrector…
We provide a finite equational presentation of graphs of treewidth at most three, solving an instanceof an open problem by Courcelle and Engelfriet. We use a syntax generalising series-parallel expressions, denoting graphs with a small…
Great part of the interest in complex networks has been motivated by the presence of structured, frequently non-uniform, connectivity. Because diverse connectivity patterns tend to result in distinct network dynamics, and also because they…
For fixed $k\ge 2$, determining the order of magnitude of the number of edges in an $n$-vertex bipartite graph not containing $C_{2k}$, the cycle of length $2k$, is a long-standing open problem. We consider an extension of this problem to…
For several decades the dominant techniques for integer linear programming have been branching and cutting planes. Recently, several authors have developed core point methods for solving symmetric integer linear programs (ILPs). An integer…
Many real-world applications give rise to large heterogeneous networks where nodes and edges can be of any arbitrary type (e.g., user, web page, location). Special cases of such heterogeneous graphs include homogeneous graphs, bipartite,…
Discrete point sets $\mathcal{S}$ such as lattices or quasiperiodic Delone sets may permit, beyond their symmetries, certain isometries $R$ such that $\mathcal{S}\cap R\mathcal{S}$ is a subset of $\mathcal{S}$ of finite density. These are…
Projection methods are popular algorithms for iteratively solving feasibility problems in Euclidean or even Hilbert spaces. They employ (selections of) nearest point mappings to generate sequences that are designed to approximate a point in…
Packing problems in discrete geometry can be modeled as finding independent sets in infinite graphs where one is interested in independent sets which are as large as possible. For finite graphs one popular way to compute upper bounds for…
Consider a graph with a rotation system, namely, for every vertex, a circular ordering of the incident edges. Given such a graph, an angle cover maps every vertex to a pair of consecutive edges in the ordering -- an angle -- such that each…
In our paper, we consider the following general problems: check feasibility, count the number of feasible solutions, find an optimal solution, and count the number of optimal solutions in $P \cap Z^n$, assuming that $P$ is a polyhedron,…
Partite, $3$-uniform hypergraphs are $3$-uniform hypergraphs in which each hyperedge contains exactly one point from each of the $3$ disjoint vertex classes. We consider the degree sequence problem of partite, $3$-uniform hypergraphs, that…