Related papers: The motif problem
We consider the problem of drawing multiple gene trees inside a single species tree in order to visualize multispecies coalescent trees. Specifically, the drawing of the species tree fills a rectangle in which each of its edges is…
Finding a maximum clique in a given graph is one of the fundamental NP-hard problems. We compare two multi-core thread-parallel adaptations of a state-of-the-art branch and bound algorithm for the maximum clique problem, and provide a novel…
In our problem, we are given access to a number of sequences of nonnegative i.i.d. random variables, whose realizations are observed sequentially. All sequences are of the same finite length. The goal is to pick one element from each…
A linear coloring of a graph is a proper coloring of the vertices of the graph so that each pair of color classes induce a union of disjoint paths. In this paper, we prove that for every connected graph with maximum degree at most three and…
We consider the classical minimum and maximum cut problems: find a partition of vertices of a graph into two disjoint subsets that minimize or maximize the sum of the weights of edges with endpoints in different subsets. It is known that if…
An isomorphism between two graphs is a bijection between their vertices that preserves the edges. We consider the problem of determining whether two finite undirected weighted graphs are isomorphic, and finding an isomorphism relating them…
We first review some topics in the classical computational geometry of lines, in particular the O(n^{3+\epsilon}) bounds for the combinatorial complexity of the set of lines in R^3 interacting with $n$ objects of fixed description…
Let a polyhedral convex set be given by a finite number of linear inequalities and consider the problem to project this set onto a subspace. This problem, called polyhedral projection problem, is shown to be equivalent to multiple objective…
We examine the metrics that arise when a finite set of points is embedded in the real line, in such a way that the distance between each pair of points is at least 1. These metrics are closely related to some other known metrics in the…
We investigate the lines tangent to four triangles in R^3. By a construction, there can be as many as 62 tangents. We show that there are at most 162 connected components of tangents, and at most 156 if the triangles are disjoint. In…
The Tur\'an hypergraph problem asks to find the maximum number of $r$-edges in a $r$-uniform hypergraph on $n$ vertices that does not contain a clique of size $a$. When $r=2$, i.e., for graphs, the answer is well-known and can be found in…
Extremal problems concerning the number of independent sets or complete subgraphs in a graph have been well studied in recent years. Cutler and Radcliffe proved that among graphs with $n$ vertices and maximum degree at most $r$, where $n =…
A linear arrangement is a mapping $\pi$ from the $n$ vertices of a graph $G$ to $n$ distinct consecutive integers. Linear arrangements can be represented by drawing the vertices along a horizontal line and drawing the edges as semicircles…
Motivated by dynamic graph visualization, we study the problem of representing a graph $G$ in the form of a \emph{storyplan}, that is, a sequence of frames with the following properties. Each frame is a planar drawing of the subgraph of $G$…
We consider three extremal problems about the number of copies of a fixed graph in another larger graph. First, we correct an error in a result of Reiher and Wagner and prove that the number of $k$-edge stars in a graph with density $x \in…
A vertex of a plane digraph is bimodal if all its incoming edges (and hence all its outgoing edges) are consecutive in the cyclic order around it. A plane digraph is bimodal if all its vertices are bimodal. Bimodality is at the heart of…
We present a factor $14D^2$ approximation algorithm for the minimum linear arrangement problem on series-parallel graphs, where $D$ is the maximum degree in the graph. Given a suitable decomposition of the graph, our algorithm runs in time…
Mixed packing and covering problems are problems that can be formulated as linear programs using only non-negative coefficients. Examples include multicommodity network flow, the Held-Karp lower bound on TSP, fractional relaxations of set…
We determine the maximum number of edges that a planar graph can have as a function of its maximum degree and matching number.
Let $X$ be a configuration of $n$ points in $\mathbb{R}^d$. What is the maximum number of vertices that $conv(T(X))$ can have among all the possible permissible projective transformations $T$? In this paper, we investigate this and…