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This paper describes a method to efficiently retrieve protein database sequences similar to a query sequence, while allowing for significant numbers of mutations. We call this method SEQR for SEQuence Retrieval. This approach increases the…

Genomics · Quantitative Biology 2018-11-05 David I. Hurwitz , Lianyi Han , Lewis Y. Geer

This paper describes a novel approach to solving unstructured search problems using a classical, signal-based emulation of a quantum computer. The classical nature of the representation allows one to perform subspace projections in addition…

Quantum Physics · Physics 2021-04-27 Brian R. La Cour , Corey I. Ostrove

Stratified sampling is a fast and simple method to generate point sets with uniform distribution in hypercubes. However, for the most common paraxial stratfication it has the prominent drawback that the number of sampled points in n…

Computation · Statistics 2018-06-14 Simon Wessing

A trust-region algorithm is presented for finding approximate minimizers of smooth unconstrained functions whose values and derivatives are subject to random noise. It is shown that, under suitable probabilistic assumptions, the new method…

Optimization and Control · Mathematics 2022-01-03 S. Bellavia , G. Gurioli , B. Morini , Ph. L. Toint

Approximate nearest neighbor (ANN) search has achieved great success in many tasks. However, existing popular methods for ANN search, such as hashing and quantization methods, are designed for static databases only. They cannot handle well…

Computer Vision and Pattern Recognition · Computer Science 2018-03-28 Donna Xu , Ivor W. Tsang , Ying Zhang

Approximate inference in dynamic systems is the problem of estimating the state of the system given a sequence of actions and partial observations. High precision estimation is fundamental in many applications like diagnosis, natural…

Artificial Intelligence · Computer Science 2012-06-18 Hannaneh Hajishirzi , Eyal Amir

A rational approximation by a ratio of polynomial functions is a flexible alternative to polynomial approximation. In particular, rational functions exhibit accurate estimations to nonsmooth and non- Lipschitz functions, where polynomial…

Optimization and Control · Mathematics 2020-02-27 V. Peiris , N. Sharon , N. Sukhorukova J. Ugon

Linear Regression is a seminal technique in statistics and machine learning, where the objective is to build linear predictive models between a response (i.e., dependent) variable and one or more predictor (i.e., independent) variables. In…

Computational Geometry · Computer Science 2023-07-19 Suraj Shetiya , Shohedul Hasan , Abolfazl Asudeh , Gautam Das

While extensive research on query evaluation has achieved consistent improvements in the time complexity of algorithms, the space complexity of query evaluation has been largely ignored. This is a particular challenge in settings with…

Databases · Computer Science 2025-09-29 Kyle Deeds , Timo Camillo Merkl , Reinhard Pichler , Dan Suciu

We initiate a systematic study of utilizing predictions to improve over approximation guarantees of classic algorithms, without increasing the running time. We propose a systematic method for a wide class of optimization problems that ask…

Data Structures and Algorithms · Computer Science 2024-11-26 Antonios Antoniadis , Marek Eliáš , Adam Polak , Moritz Venzin

We address the problem of extractive question answering using document-level distant super-vision, pairing questions and relevant documents with answer strings. We compare previously used probability space and distant super-vision…

Computation and Language · Computer Science 2020-05-06 Hao Cheng , Ming-Wei Chang , Kenton Lee , Kristina Toutanova

We consider the problem of using sentence compression techniques to facilitate query-focused multi-document summarization. We present a sentence-compression-based framework for the task, and design a series of learning-based compression…

Computation and Language · Computer Science 2016-06-27 Lu Wang , Hema Raghavan , Vittorio Castelli , Radu Florian , Claire Cardie

Tree search is a fundamental tool for planning, as many sequential decision-making problems can be framed as searching over tree-structured spaces. We propose an uncertainty-guided tree search algorithm for settings where the reward…

Machine Learning · Computer Science 2025-09-05 Julia Grosse , Ruotian Wu , Ahmad Rashid , Cheng Zhang , Philipp Hennig , Pascal Poupart , Agustinus Kristiadi

Decoding for many NLP tasks requires an effective heuristic algorithm for approximating exact search since the problem of searching the full output space is often intractable, or impractical in many settings. The default algorithm for this…

Computation and Language · Computer Science 2022-11-16 Clara Meister , Tim Vieira , Ryan Cotterell

We consider the following generalization of the binary search problem. A search strategy is required to locate an unknown target node $t$ in a given tree $T$. Upon querying a node $v$ of the tree, the strategy receives as a reply an…

Data Structures and Algorithms · Computer Science 2017-02-28 Dariusz Dereniowski , Adrian Kosowski , Przemyslaw Uznanski , Mengchuan Zou

Offline Goal-Conditioned Reinforcement Learning seeks to train agents to reach specified goals from previously collected trajectories. Scaling that promises to long-horizon tasks remains challenging, notably due to compounding…

Machine Learning · Computer Science 2026-02-02 Anthony Kobanda , Waris Radji , Mathieu Petitbois , Odalric-Ambrym Maillard , Rémy Portelas

We consider problems with multiple linear objectives and linear constraints and use Adjustable Robust Optimization and Polynomial Optimization as tools to approximate the Pareto set with polynomials of arbitrarily large degree. The main…

Optimization and Control · Mathematics 2015-01-13 Bram L. Gorissen , Dick den Hertog

In this paper we present a novel non-parametric method of simplifying piecewise linear curves and we apply this method as a statistical approximation of structure within sequential data in the plane. We consider the problem of minimizing…

Computational Geometry · Computer Science 2012-05-31 Stephane Durocher , Alexandre Leblanc , Jason Morrison , Matthew Skala

We propose a cost-effective framework for preference elicitation and aggregation under the Plackett-Luce model with features. Given a budget, our framework iteratively computes the most cost-effective elicitation questions in order to help…

Machine Learning · Computer Science 2018-07-10 Zhibing Zhao , Haoming Li , Junming Wang , Jeffrey Kephart , Nicholas Mattei , Hui Su , Lirong Xia

In information retrieval systems, search parameters are optimized to ensure high effectiveness based on a set of past searches and these optimized parameters are then used as the system configuration for all subsequent queries. A better…

Information Retrieval · Computer Science 2024-05-27 Josiane Mothe , Md Zia Ullah
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