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Recent advances in healthcare technologies have led to the availability of large amounts of biological samples across several techniques and applications. In particular, in the last few years, Raman spectroscopy analysis of biological…

Quantitative Methods · Quantitative Biology 2025-06-24 Marco Piazza , Andrea Spinelli , Francesca Maggioni , Marzia Bedoni , Enza Messina

As we approach the physical limits of CMOS technology, advances in materials science and nanotechnology are making available a variety of unconventional computing substrates that can potentially replace top-down-designed silicon-based…

Emerging Technologies · Computer Science 2014-05-05 Alireza Goudarzi , Matthew R. Lakin , Darko Stefanovic

We present FabSim, a toolkit developed to simplify a range of computational tasks for researchers in diverse disciplines. FabSim is flexible, adaptable, and allows users to perform a wide range of tasks with ease. It also provides a…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-09-21 Derek Groen , Agastya Bhati , James Suter , James Hetherington , Stefan Zasada , Peter Coveney

The use of virtual data for enhancing the collaboration between large groups of scientists is explored in several ways: - by defining ``virtual'' parameter spaces which can be searched and shared in an organized way by a collaboration of…

Data Analysis, Statistics and Probability · Physics 2016-09-08 A. Arbree , P. Avery , D. Bourilkov , R. Cavanaugh , J. Rodriguez , G. Graham , M. Wilde , Y. Zhao

Exa-scale simulations are on the horizon but almost no new design for the output has been proposed in recent years. In simulations using individual time steps, the traditional snapshots are over resolving particles/cells with large time…

Instrumentation and Methods for Astrophysics · Physics 2022-10-25 Loic Hausammann , Pedro Gonnet , Matthieu Schaller

This paper presents LIBTwinSVM, a free, efficient, and open source library for Twin Support Vector Machines (TSVMs). Our library provides a set of useful functionalities such as fast TSVMs estimators, model selection, visualization, a…

Machine Learning · Computer Science 2020-01-29 Amir M. Mir , Mahdi Rahbar , Jalal A. Nasiri

Many research groups aspire to make data and code FAIR and reproducible, yet struggle because the data and code life cycles are disconnected, executable environments are often missing from published work, and technical skill requirements…

The raster model is commonly used for the representation of images in many domains, and is especially useful in Geographic Information Systems (GIS) to store information about continuous variables of the space (elevation, temperature,…

Data Structures and Algorithms · Computer Science 2019-11-20 Nieves R. Brisaboa , Ana Cerdeira-Pena , Guillermo de Bernardo , Gonzalo Navarro , Oscar Pedreira

The explosion of scientific literature has made the efficient and accurate extraction of structured data a critical component for advancing scientific knowledge and supporting evidence-based decision-making. However, existing tools often…

Human-Computer Interaction · Computer Science 2025-11-06 Xingbo Wang , Samantha L. Huey , Rui Sheng , Saurabh Mehta , Fei Wang

This is a thought piece on data-intensive science requirements for databases and science centers. It argues that peta-scale datasets will be housed by science centers that provide substantial storage and processing for scientists who access…

Databases · Computer Science 2007-05-23 Jim Gray , David T. Liu , Maria Nieto-Santisteban , Alexander S. Szalay , David DeWitt , Gerd Heber

Recent developments in the commercial open source community have catalysed the use of Linux containers for scalable deployment of web-based applications to the cloud. Scientific software can be containerized with dependencies, configuration…

Software Engineering · Computer Science 2015-09-30 Robert Nagler , David Bruhwiler , Paul Moeller , Stephen Webb

This paper presents a multifarious examination of natural resources and environmental scientists' adventures navigating the policy change towards open access and cultural shift in data management, sharing, and reuse. Situated in the…

Digital Libraries · Computer Science 2018-03-06 Yi Shen

In many applications, input data are sampled functions taking their values in infinite dimensional spaces rather than standard vectors. This fact has complex consequences on data analysis algorithms that motivate modifications of them. In…

Statistics Theory · Mathematics 2007-05-23 Fabrice Rossi , Nathalie Villa

In this paper we promote the use of Support Vector Machines (SVM) as a machine learning tool for searches in high-energy physics. As an example for a new- physics search we discuss the popular case of Supersymmetry at the Large Hadron…

High Energy Physics - Experiment · Physics 2022-11-16 Mehmet Özgür Sahin , Dirk Krücker , Isabell-Alissandra Melzer-Pellmann

Scientific data processing often requires task-specific algorithms or AI models, creating a barrier for domain scientists who need to analyze their data but may not have extensive computing or image-processing expertise. This barrier is…

Artificial Intelligence · Computer Science 2026-05-26 Ming Du , Xiangyu Yin , Yanqi Luo , Dishant Beniwal , Songyuan Tang , Hemant Sharma , Mathew J. Cherukara

Modern scientific simulations, observations, and large-scale experiments generate data at volumes that often exceed the limits of storage, processing, and analysis. This challenge drives the development of data reduction methods that…

Machine Learning · Computer Science 2025-11-18 Minh Vu , Andrey Lokhov

A distributed data warehouse system is one of the actual issues in the field of astroparticle physics. Famous experiments, such as TAIGA, KASCADE-Grande, produce tens of terabytes of data measured by their instruments. It is critical to…

We propose a new file format named "H5MD" for storing molecular simulation data, such as trajectories of particle positions and velocities, along with thermodynamic observables that are monitored during the course of the simulation. H5MD…

Computational Physics · Physics 2014-05-23 Pierre de Buyl , Peter H. Colberg , Felix Höfling

Visual Simultaneous Localization and Mapping (VSLAM) research faces significant challenges due to fragmented toolchains, complex system configurations, and inconsistent evaluation methodologies. To address these issues, we present…

Computer Vision and Pattern Recognition · Computer Science 2025-04-08 Alejandro Fontan , Tobias Fischer , Javier Civera , Michael Milford

Traditional regression models assume stationary relationships between predictors and responses, failing to capture the spatial heterogeneity present in many environmental, epidemiological, and ecological processes. To address this…

Methodology · Statistics 2025-05-27 Justice Akuoko-Frimpong , Edward Shao , Jonathan Ta
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