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The Poisson-Boltzmann equation is a widely used model to study the electrostatics in molecular solvation. Its numerical solution using a boundary integral formulation requires a mesh on the molecular surface only, yielding accurate…

Numerical Analysis · Mathematics 2020-09-25 Vicente Ramm , Jehanzeb H. Chaudhry , Christopher D. Cooper

Several important problems in partial differential equations can be formulated as integral equations. Often the integral operator defines the solution of an elliptic problem with specified jump conditions at an interface. In principle the…

Numerical Analysis · Mathematics 2020-02-10 J. Thomas Beale , Wenjun Ying

We present a numerical approximation method for linear diffusion-reaction problems with possibly discontinuous Dirichlet boundary conditions. The solution of such problems can be represented as a linear combination of explicitly known…

Numerical Analysis · Mathematics 2017-07-05 Ramona Baumann , Thomas P. Wihler

In this paper, we consider the Dirichlet problem of inhomogeneous incompressible nematic liquid crystal equations in bounded smooth domains of two or three dimensions. We prove the global existence and uniqueness of strong solutions with…

Analysis of PDEs · Mathematics 2015-03-13 Jinkai Li

Classical density functional theory (DFT) of fluids is a valuable tool to analyze inhomogeneous fluids. However, few numerical solution algorithms for three-dimensional systems exist. Here we present an efficient numerical scheme for fluids…

A method is described to solve the Poisson problem for a three dimensional source distribution that is periodic into one direction. Perpendicular to the direction of periodicity a free space (or open) boundary is realized. In beam physics,…

Accelerator Physics · Physics 2016-03-23 M. Dohlus , Ch. Henning

The Poisson-Boltzmann equation offers an efficient way to study electrostatics in molecular settings. Its numerical solution with the boundary element method is widely used, as the complicated molecular surface is accurately represented by…

Numerical Analysis · Mathematics 2021-08-25 Stefan D. Search , Christopher D. Cooper , Elwin van't Wout

The 2D Euler equations are a simple but rich set of non-linear PDEs that describe the evolution of an ideal inviscid fluid, for which one dimension is negligible. Solving numerically these equations can be extremely demanding. Several…

Numerical Analysis · Mathematics 2023-01-18 Paolo Cifani , Sagy Ephrati , Milo Viviani

Linear elastic fracture mechanics admit analytic solutions that have low regularity at crack tips. Current numerical methods for partial differential equations (PDEs) of this type suffer from the constraint of such low regularity, and fail…

Numerical Analysis · Mathematics 2016-11-29 Y. C. Zhou , Varun Gupta

A numerical method using implicit surface representations is proposed to solve the linearized Poisson-Boltzmann equations that arise in mathematical models for the electrostatics of molecules in solvent. The proposed method used an implicit…

Numerical Analysis · Mathematics 2018-04-04 Yimin Zhong , Kui Ren , Richard Tsai

The elliptic 2-Hessian equation is a fully nonlinear partial differential equation (PDE) that is related to intrinsic curvature for three dimensional manifolds. We introduce two numerical methods for this PDE: the first is provably…

Numerical Analysis · Mathematics 2016-02-11 Brittany D. Froese , Adam M. Oberman , Tiago Salvador

This paper is concerned with the boundary integral equation method for solving the exterior Neumann boundary value problem of dynamic poroelasticity in two dimensions. The main contribution of this work consists of two aspescts: the…

Computational Physics · Physics 2020-08-18 Lu Zhang , Liwei Xu , Tao Yin

Employing a limiting case of a conjecture for constructing piecewise separable-variables functions, the elements of the Pseudoanalytic Function Theory are used for numerically approaching solutions of the forward Dirichlet boundary value…

Mathematical Physics · Physics 2012-10-18 M. P. Ramirez T. , C. M. A. Robles G. , R. A. Hernandez-Becerril

We construct solutions to the randomly-forced Navier--Stokes--Poisson system in periodic three-dimensional domains or in the whole three-dimensional Euclidean space. These solutions are weak in the sense of PDEs and also weak in the sense…

Analysis of PDEs · Mathematics 2020-05-04 Donatella Donatelli , Pierangelo Marcati , Prince Romeo Mensah

Computations of incompressible flows with velocity boundary conditions require solution of a Poisson equation for pressure with all Neumann boundary conditions. Discretization of such a Poisson equation results in a rank-deficient matrix of…

Numerical Analysis · Mathematics 2022-02-08 Shantanu Shahane , Surya Pratap Vanka

We develop efficient and high-order accurate solvers for the Helmholtz equation on complex geometry. The schemes are based on the WaveHoltz algorithm which computes solutions of the Helmholtz equation by time-filtering solutions of the wave…

Numerical Analysis · Mathematics 2025-04-07 Daniel Appelo , Jeffrey W. Banks , William D. Henshaw , Donald W. Schwendeman

In this work we analyse the convergence of solutions of the Poisson equation with Neumann boundary conditions in a thin domain with highly oscillatory behavior $\mathcal{U}^\varepsilon$ contained in the sphere $\mathbb{S}^2$. Using the…

Analysis of PDEs · Mathematics 2026-03-04 Naísa C. Garcia , Raquel Lehrer , Marcus A. M. Marrocos

This paper presents a low-communication-overhead parallel method for solving the 3D incompressible Navier-Stokes equations. A fully-explicit projection method with second-order space-time accuracy is adopted. Combined with fast Fourier…

Fluid Dynamics · Physics 2021-04-21 Jiabin Xie , Jianchao He , Yun Bao , Xi Chen

We investigate the inverse Cauchy and data completion problems for elliptic partial differential equations in a bounded domain $D \subset \mathbb{R}^d$, $d \ge 2$, with a special emphasis on the steady-state heat conduction in anisotropic…

Numerical Analysis · Mathematics 2025-06-06 Iulian Cîmpean , Andreea Grecu , Liviu Marin

The Poisson-Boltzmann equation (PBE) is an implicit solvent continuum model for calculating the electrostatic potential and energies of ionic solvated biomolecules. However, its numerical solution remains a significant challenge due strong…

Numerical Analysis · Mathematics 2023-06-13 Cleophas Kweyu , Venera Khoromskaia , Boris Khoromskij , Matthias Stein , Peter Benner
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