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The primary goal in cluster analysis is to discover natural groupings of objects. The field of cluster analysis is crowded with diverse methods that make special assumptions about data and address different scientific aims. Despite its…

Genomics · Quantitative Biology 2018-06-07 Gary K. Chen , Eric Chi , John Ranola , Kenneth Lange

Partial orders and directed acyclic graphs are commonly recurring data structures that arise naturally in numerous domains and applications and are used to represent ordered relations between entities in the domains. Examples are task…

Machine Learning · Computer Science 2021-12-21 Daniel Bakkelund

The problem of missing data has been persistent for a long time and poses a major obstacle in machine learning and statistical data analysis. Past works in this field have tried using various data imputation techniques to fill in the…

Machine Learning · Computer Science 2020-11-20 Rishab Khincha , Utkarsh Sarawgi , Wazeer Zulfikar , Pattie Maes

There has been a surge in the number of large and flat data sets - data sets containing a large number of features and a relatively small number of observations - due to the growing ability to collect and store information in medical…

Machine Learning · Statistics 2017-07-05 Hongyang Zhang , Ruben H. Zamar

The paper outlines the principles of construction of a broad class of hierarchical aggregation algorithms of cluster analysis, essentially based on minimum distance mergers, which are derived from the general bi-partial objective function.…

Other Statistics · Statistics 2026-02-25 Jan W. Owsiński

One important tool is the optimal clustering of data into useful categories. Dividing similar objects into a smaller number of clusters is of importance in many applications. These include search engines, monitoring of academic performance,…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-09-21 Gavriel Yarmish , Philip Listowsky , Simon Dexter

Comparing clusterings is central to evaluating unsupervised models, yet the many existing similarity measures can produce widely divergent, sometimes contradictory, evaluations. Clustering similarity measures are typically organized into…

Machine Learning · Statistics 2025-11-06 Alexander J. Gates

Hierarchical clustering is a fundamental task often used to discover meaningful structures in data, such as phylogenetic trees, taxonomies of concepts, subtypes of cancer, and cascades of particle decays in particle physics. Typically…

Data Structures and Algorithms · Computer Science 2020-10-23 Craig S. Greenberg , Sebastian Macaluso , Nicholas Monath , Ji-Ah Lee , Patrick Flaherty , Kyle Cranmer , Andrew McGregor , Andrew McCallum

This paper examines the use of a hierarchical coevolutionary genetic algorithm under different partnering strategies. Cascading clusters of sub-populations are built from the bottom up, with higher-level sub-populations optimising larger…

Neural and Evolutionary Computing · Computer Science 2010-07-05 Uwe Aickelin , Larry Bull

We develop data structures for dynamic closest pair problems with arbitrary distance functions, that do not necessarily come from any geometric structure on the objects. Based on a technique previously used by the author for Euclidean…

Data Structures and Algorithms · Computer Science 2010-01-21 David Eppstein

In correlation clustering, we are given $n$ objects together with a binary similarity score between each pair of them. The goal is to partition the objects into clusters so to minimise the disagreements with the scores. In this work we…

Machine Learning · Computer Science 2020-01-15 Marco Bressan , Nicolò Cesa-Bianchi , Andrea Paudice , Fabio Vitale

Crowdsourced, or human computation based clustering algorithms usually rely on relative distance comparisons, as these are easier to elicit from human workers than absolute distance information. A relative distance comparison is a statement…

Data Structures and Algorithms · Computer Science 2017-09-26 Antti Ukkonen

Clustering of mixed-type datasets can be a particularly challenging task as it requires taking into account the associations between variables with different level of measurement, i.e., nominal, ordinal and/or interval. In some cases,…

Methodology · Statistics 2022-04-22 Odysseas Moschidis , Angelos Markos , Theodore Chadjipadelis

In this paper, we introduce a local search algorithm for hierarchical clustering. For the local step, we consider a tree re-arrangement operation, known as the {\em interchange}, which involves swapping two closely positioned sub-trees…

Data Structures and Algorithms · Computer Science 2024-05-28 Hossein Jowhari

Topological methods have the potential of exploring data clouds without making assumptions on their the structure. Here we propose a hierarchical topological clustering algorithm that can be implemented with any distance choice. The…

Machine Learning · Computer Science 2026-02-10 Ana Carpio , Gema Duro

Convex clustering is a recent stable alternative to hierarchical clustering. It formulates the recovery of progressively coalescing clusters as a regularized convex problem. While convex clustering was originally designed for handling…

Applications · Statistics 2019-12-12 Claire Donnat , Susan Holmes

Forecast reconciliation has attracted significant research interest in recent years, with most studies taking the hierarchy of time series as given. We extend existing work that uses time series clustering to construct hierarchies, with the…

Methodology · Statistics 2024-09-10 Bohan Zhang , Anastasios Panagiotelis , Han Li

Agglomerative hierarchical clustering can be implemented with several strategies that differ in the way elements of a collection are grouped together to build a hierarchy of clusters. Here we introduce versatile linkage, a new infinite…

Methodology · Statistics 2021-03-26 Alberto Fernández , Sergio Gómez

Unsupervised clustering, also known as natural clustering, stands for the classification of data according to their similarities. Here we study this problem from the perspective of complex networks. Mapping the description of data…

Data Analysis, Statistics and Probability · Physics 2012-08-22 Clara Granell , Sergio Gomez , Alex Arenas

We introduce a novel statistical significance-based approach for clustering hierarchical data using semi-parametric linear mixed-effects models designed for responses with laws in the exponential family (e.g., Poisson and Bernoulli). Within…

Methodology · Statistics 2025-02-04 Alessandra Ragni , Chiara Masci , Francesca Ieva , Anna Maria Paganoni