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We present an approach to model-based hierarchical clustering by formulating an objective function based on a Bayesian analysis. This model organizes the data into a cluster hierarchy while specifying a complex feature-set partitioning that…

Machine Learning · Computer Science 2013-01-18 Shivakumar Vaithyanathan , Byron E Dom

In cancer research, clustering techniques are widely used for exploratory analyses and dimensionality reduction, playing a critical role in the identification of novel cancer subtypes, often with direct implications for patient management.…

We consider the problem of clustering partially labeled data from a minimal number of randomly chosen pairwise comparisons between the items. We introduce an efficient local algorithm based on a power iteration of the non-backtracking…

Machine Learning · Computer Science 2018-06-28 Alaa Saade , Florent Krzakala , Marc Lelarge , Lenka Zdeborová

Clustering, a fundamental task in data science and machine learning, groups a set of objects in such a way that objects in the same cluster are closer to each other than to those in other clusters. In this paper, we consider a well-known…

Computational Geometry · Computer Science 2018-11-07 Georgia Avarikioti , Alain Ryser , Yuyi Wang , Roger Wattenhofer

We study the cost function for hierarchical clusterings introduced by [arXiv:1510.05043] where hierarchies are treated as first-class objects rather than deriving their cost from projections into flat clusters. It was also shown in…

Machine Learning · Computer Science 2016-10-31 Aurko Roy , Sebastian Pokutta

Hierarchical clustering is a common algorithm in data analysis. It is unique among many clustering algorithms in that it draws dendrograms based on the distance of data under a certain metric, and group them. It is widely used in all areas…

Instrumentation and Methods for Astrophysics · Physics 2022-11-14 Heng Yu , Xiaolan Hou

In an age of increasingly large data sets, investigators in many different disciplines have turned to clustering as a tool for data analysis and exploration. Existing clustering methods, however, typically depend on several nontrivial…

Quantitative Methods · Quantitative Biology 2009-11-11 Noam Slonim , Gurinder Singh Atwal , Gasper Tkacik , William Bialek

One of the most widely used techniques for data clustering is agglomerative clustering. Such algorithms have been long used across many different fields ranging from computational biology to social sciences to computer vision in part…

Machine Learning · Computer Science 2014-07-15 Maria-Florina Balcan , Yingyu Liang , Pramod Gupta

Hierarchical Clustering is a popular tool for understanding the hereditary properties of a data set. Such a clustering is actually a sequence of clusterings that starts with the trivial clustering in which every data point forms its own…

Data Structures and Algorithms · Computer Science 2022-05-04 Anna Arutyunova , Heiko Röglin

This paper considers networks where relationships between nodes are represented by directed dissimilarities. The goal is to study methods that, based on the dissimilarity structure, output hierarchical clusters, i.e., a family of nested…

Machine Learning · Computer Science 2016-07-22 Gunnar Carlsson , Facundo Mémoli , Alejandro Ribeiro , Santiago Segarra

Hierarchical clustering is a widely used method for unsupervised learning with numerous applications. However, in the application of modern algorithms, the datasets studied are usually large and dynamic. If the hierarchical clustering is…

Machine Learning · Computer Science 2025-07-15 Shijie Li , Weiqiang He , Ruobing Bai , Pan Peng

Pattern comparison represents a fundamental and crucial aspect of scientific modeling, artificial intelligence, and pattern recognition. Three main approaches have typically been applied for pattern comparison: (i) distances; (ii)…

Physics and Society · Physics 2024-07-12 Alexandre Benatti , Luciano da F. Costa

Hierarchical clustering is a class of algorithms that seeks to build a hierarchy of clusters. It has been the dominant approach to constructing embedded classification schemes since it outputs dendrograms, which capture the hierarchical…

Machine Learning · Statistics 2018-08-28 Xiaofei Ma , Satya Dhavala

Hierarchical clustering is a powerful tool for exploratory data analysis, organizing data into a tree of clusterings from which a partition can be chosen. This paper generalizes these ideas by proving that, for any reasonable hierarchy, one…

Machine Learning · Computer Science 2025-11-13 Andrew Draganov , Pascal Weber , Rasmus Skibdahl Melanchton Jørgensen , Anna Beer , Claudia Plant , Ira Assent

In this work, we introduce a novel methodology for divisive hierarchical clustering. Our divisive (``top-down'') approach is motivated by the fact that agglomerative hierarchical clustering (``bottom-up''), which is commonly used for…

Methodology · Statistics 2025-10-07 Jan O. Bauer

The paper tackles the problem of clustering multiple networks, directed or not, that do not share the same set of vertices, into groups of networks with similar topology. A statistical model-based approach based on a finite mixture of…

Statistics Theory · Mathematics 2023-11-07 Tabea Rebafka

Datasets in high-dimension do not typically form clusters in their original space; the issue is worse when the number of points in the dataset is small. We propose a low-computation method to find statistically significant clustering…

Machine Learning · Statistics 2020-08-24 Alden Bradford , Tarun Yellamraju , Mireille Boutin

Comparison-based learning addresses the problem of learning when, instead of explicit features or pairwise similarities, one only has access to comparisons of the form: \emph{Object $A$ is more similar to $B$ than to $C$.} Recently, it has…

Machine Learning · Computer Science 2023-04-04 Aishik Mandal , Michaël Perrot , Debarghya Ghoshdastidar

This work proposes a hierarchical clustering algorithm for high-dimensional datasets using the cyclic space of reversible finite cellular automata. In cellular automaton (CA) based clustering, if two objects belong to the same cycle, they…

Formal Languages and Automata Theory · Computer Science 2024-08-06 Baby C. J. , Kamalika Bhattacharjee

Clustering is an underspecified task: there are no universal criteria for what makes a good clustering. This is especially true for relational data, where similarity can be based on the features of individuals, the relationships between…

Machine Learning · Statistics 2017-09-29 Sebastijan Dumancic , Hendrik Blockeel