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Determining the evolutionary history of a given biological data is an important task in biological sciences. Given a set of quartet topologies over a set of taxa, the Maximum Quartet Consistency (MQC) problem consists of computing a global…

Artificial Intelligence · Computer Science 2008-12-18 Antonio Morgado , Joao Marques-Silva

We consider approaches for improving the efficiency of algorithms for fitting nonconvex penalized regression models such as SCAD and MCP in high dimensions. In particular, we develop rules for discarding variables during cyclic coordinate…

Computation · Statistics 2016-07-20 Sangin Lee , Patrick Breheny

Memory consistency models (MCMs) are at the heart of concurrent programming. They represent the behaviour of concurrent programs at the chip level. To test these models small program snippets called litmus test are generated, which show…

Programming Languages · Computer Science 2018-08-30 Ruth Hoffmann , Özgür Akgün , Susmit Sarkar

The maximum-cut problem is one of the fundamental problems in combinatorial optimization. With the advent of quantum computers, both the maximum-cut and the equivalent quadratic unconstrained binary optimization problem have experienced…

Optimization and Control · Mathematics 2022-02-07 Daniel Rehfeldt , Thorsten Koch , Yuji Shinano

McEliece encryption scheme which enjoys relatively small key sizes as well as a security reduction to hard problems of coding theory. Furthermore, it remains secure against a quantum adversary and is very well suited to low cost…

Cryptography and Security · Computer Science 2016-08-23 Julia Chaulet , Nicolas Sendrier

Index coding, or broadcasting with side information, is a network coding problem of most fundamental importance. In this problem, given a directed graph, each vertex represents a user with a need of information, and the neighborhood of each…

Information Theory · Computer Science 2016-05-02 Abhishek Agarwal , Arya Mazumdar

In this article, we develop a clique-based method for social network clustering. We introduce a new index to evaluate the quality of clustering results, and propose an efficient algorithm based on recursive bipartition to maximize an…

Social and Information Networks · Computer Science 2018-05-11 Guang Ouyang , Dipak K. Dey , Panpan Zhang

One of the main problems in random network coding is to compute good lower and upper bounds on the achievable cardinality of the so-called subspace codes in the projective space $\mathcal{P}_q(n)$ for a given minimum distance. The…

Information Theory · Computer Science 2020-11-16 Tao Feng , Sascha Kurz , Shuangqing Liu

In the modern era of large-scale computing systems, a crucial use of error correcting codes is to judiciously introduce redundancy to ensure recoverability from failure. To get the most out of every byte, practitioners and theorists have…

Information Theory · Computer Science 2026-02-26 Joshua Brakensiek , Venkatesan Guruswami

In this paper, we develop a general regularization-based continuous optimization framework for the maximum clique problem. In particular, we consider a broad class of regularization terms that can be included in the classic Motzkin-Strauss…

Optimization and Control · Mathematics 2017-09-11 James T. Hungerford , Francesco Rinaldi

We present exact mixed-integer linear programming formulations for verifying the performance of first-order methods for parametric quadratic optimization. We formulate the verification problem as a mixed-integer linear program where the…

Optimization and Control · Mathematics 2026-05-29 Vinit Ranjan , Jisun Park , Stefano Gualandi , Andrea Lodi , Bartolomeo Stellato

The extensive use of HPC infrastructures and frameworks for running dataintensive applications has led to a growing interest in data partitioning techniques and strategies. In fact, application performance can be heavily affected by how…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-02 Riccardo Cantini , Fabrizio Marozzo , Alessio Orsino , Domenico Talia , Paolo Trunfio , Rosa M. Badia , Jorge Ejarque , Fernando Vazquez

We study the Maximum Balanced Biclique (MBB) problem: Given a bipartite graph $G$ with $n$ vertices on each side, find a balanced biclique in $G$ with maximum size. We give a polynomial-time $\left(\frac{n}{\widetilde{\Omega}\left((\log…

Data Structures and Algorithms · Computer Science 2026-05-01 Pasin Manurangsi

In this work, we study a recently proposed direct shaping code for flash memory. This rate-1 code is designed to reduce the wear for SLC (one bit per cell) flash by minimizing the average fraction of programmed cells when storing structured…

Information Theory · Computer Science 2020-07-14 Yi Liu , Paul H. Siegel

In the (1-dimensional) bin packing problem, we are asked to pack all the given items into bins, each of capacity one, so that the number of non-empty bins is minimized. Zhu~[Chaos, Solitons \& Fractals 2016] proposed an approximation…

Data Structures and Algorithms · Computer Science 2025-09-23 Hiroshi Fujiwara , Rina Atsumi , Hiroaki Yamamoto

Many modern applications collect highly imbalanced categorical data, with some categories relatively rare. Bayesian hierarchical models combat data sparsity by borrowing information, while also quantifying uncertainty. However, posterior…

Statistics Theory · Mathematics 2017-06-27 James E. Johndrow , Aaron Smith , Natesh Pillai , David B. Dunson

In this paper, we relate the problem of finding a maximum clique to the intersection number of the input graph (i.e. the minimum number of cliques needed to edge cover the graph). In particular, we consider the maximum clique problem for…

Discrete Mathematics · Computer Science 2012-04-19 S. Nikoletseas , C. Raptopoulos , P. G. Spirakis

We present shared-memory parallel methods for Maximal Clique Enumeration (MCE) from a graph. MCE is a fundamental and well-studied graph analytics task, and is a widely used primitive for identifying dense structures in a graph. Due to its…

Data Structures and Algorithms · Computer Science 2020-01-30 Apurba Das , Seyed-Vahid Sanei-Mehri , Srikanta Tirthapura

In this paper we shall consider optimal scaling problems for high-dimensional Metropolis--Hastings algorithms where updates can be chosen to be lower dimensional than the target density itself. We find that the optimal scaling rule for the…

Probability · Mathematics 2007-05-23 Peter Neal , Gareth Roberts

Numerous graph neural network (GNN)-based algorithms have been proposed to solve graph-based combinatorial optimization problems (COPs), but methods to explain their predictions remain largely undeveloped. We introduce ARM-Explainer, a…

Machine Learning · Computer Science 2025-12-01 Bharat Sharman , Elkafi Hassini