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We introduce three stochastic cooperative models for particle deposition and evaporation relevant to ionic self-assembly of nanoparticles with applications in surface fabrication and nanomedicine. We present a method for mapping a…

Chemical Physics · Physics 2015-06-08 E. M. Schwen

We study the asymmetric exclusion process on a regular Cayley tree with arbitrary co-ordination number. In this model particles can enter the system only at the parent site and exit from one of the sites at the last level. In the bulk they…

Statistical Mechanics · Physics 2011-05-31 Mahashweta Basu , P. K. Mohanty

We present linear response theories in the continuum capable of describing photoionization spectra and dynamic polarizabilities of finite systems with no spatial symmetry. Our formulations are based on the time-dependent local density…

Chemical Physics · Physics 2016-09-08 Takashi Nakatsukasa , Kazuhiro Yabana

Spiky coatings (also known as nanoforests or Fakir-like surfaces) have found many applications in chemical physics, material sciences and biotechnology, such as superhydrophobic materials, filtration and sensing systems, selective protein…

Chemical Physics · Physics 2023-10-03 Denis S. Grebenkov , Alexei T. Skvortsov

We consider a random sequential adsorption process on the one-dimensional lattice with nearest-neighbor exclusion. In this model, each site $s \in \mathbb{Z}$ starts empty and we will try to occupy it in time $t_s$, where…

Probability · Mathematics 2023-11-22 Charles S. do Amaral , Diogo C. dos Santos

We present results of a new model of sequential adsorption in which the adsorbing particles are correlated with the particles attached to the substrate. The strength of the correlations is measured by a tunable parameter $\sigma$. The model…

Statistical Mechanics · Physics 2009-11-07 R. Pastor-Satorras , J. M. Rubi

We present a sequential sampling methodology for weakly structural Markov laws, arising naturally in a Bayesian structure learning context for decomposable graphical models. As a key component of our suggested approach, we show that the…

Statistics Theory · Mathematics 2019-09-04 Jimmy Olsson , Tetyana Pavlenko , Felix L. Rios

CO$_2$ capture using carbon-based materials, particularly graphene and graphene-like materials, is a promising strategy to deal with CO$_2$ emissions. However, significant gaps remain in our understanding of the molecular-level interaction…

Certain sequences of peptoid polymers (synthetic analogs of peptides) assemble into bilayer nanosheets via a nonequilibrium assembly pathway of adsorption, compression, and collapse at an air-water interface. As with other large-scale…

Biological Physics · Physics 2014-10-01 Thomas K. Haxton , Ranjan V. Mannige , Ronald N. Zuckermann , Stephen Whitelam

Random sequential adsorption algorithm is a popular tool for modelling structure of monolayers built in irreversible adsorption experiments. However, this algorithm becomes very inefficient when the density of molecules in a layer rises.…

Computational Physics · Physics 2019-11-25 Michał Cieśla

Tree ensembles are flexible predictive models that can capture relevant variables and to some extent their interactions in a compact and interpretable manner. Most algorithms for obtaining tree ensembles are based on versions of boosting or…

Machine Learning · Statistics 2020-02-21 Gitesh Dawer , Yangzi Guo , Adrian Barbu

Adsorption of dimers is modelled using random sequential adsorption algorithm. The interaction between molecules is given by screened electrostatic potential. The paper focuses on the properties of adsorbed monolayers as well as the…

Materials Science · Physics 2013-05-14 Michal Ciesla , Jakub Barbasz

We present a new class of sequential adsorption models in which the adsorbing particles reach the surface following an inclined direction (shadow models). Capillary electrophoresis, adsorption in the presence of a shear or on an inclined…

Condensed Matter · Physics 2009-10-28 I. Pagonabarraga , J. Bafaluy , J. M. Rubi

We study the problem of learning a latent tree graphical model where samples are available only from a subset of variables. We propose two consistent and computationally efficient algorithms for learning minimal latent trees, that is, trees…

Machine Learning · Statistics 2010-09-15 Myung Jin Choi , Vincent Y. F. Tan , Animashree Anandkumar , Alan S. Willsky

A learning algorithm is presented which given the structure of a causal tree, will estimate its link probabilities by sequential measurements on the leaves only. Internal nodes of the tree represent conceptual (hidden) variables…

Artificial Intelligence · Computer Science 2013-04-12 Igor Roizer , Judea Pearl

Lubrication equations allow to describe many structurin processes of thin liquid films. We develop and apply numerical tools suitable for their analysis employing a dynamical systems approach. In particular, we present a time integration…

Pattern Formation and Solitons · Physics 2010-09-03 Ph. Beltrame , U. Thiele

The subject of analysis is a non-linear three-compartment model, widely used in pharmacological absorption studies. It has been transformed into a general form, thus leading automatically to an appropriate approximation. This made the…

Other Quantitative Biology · Quantitative Biology 2010-03-04 Niko Komin , Raúl Toral

We consider random recursive trees that are grown via community modulated schemes that involve random attachment or degree based attachment. The aim of this paper is to derive general techniques based on continuous time embedding to study…

Probability · Mathematics 2020-08-05 Shankar Bhamidi , Ruituo Fan , Nicolas Fraiman , Andrew Nobel

Knowledge of airway tree morphology has important clinical applications in diagnosis of chronic obstructive pulmonary disease. We present an automatic tree extraction method based on multiple hypothesis tracking and template matching for…

Computer Vision and Pattern Recognition · Computer Science 2016-11-28 Raghavendra Selvan , Jens Petersen , Jesper H. Pedersen , Marleen de Bruijne

Bayesian hierarchical models are used to share information between related samples and obtain more accurate estimates of sample-level parameters, common structure, and variation between samples. When the parameter of interest is the…

Methodology · Statistics 2019-06-18 Jonathan Christensen , Li Ma