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A closed-form description is proposed to explain nonlinear and slow dynamics effects exhibited by sandstone bars in longitudinal resonance experiments. Along with the fast subsystem of longitudinal nonlinear displacements we examine the…

The type 1 pilus is a bacterial filament consisting of a long coiled proteic chain of subunits joined together by non-covalent bonding between complementing $\beta$-strands. Its strength and structural stability are critical for its…

Biological Physics · Physics 2020-04-17 Fabiano Corsetti , Alvaro Alonso-Caballero , Simon Poly , Raul Perez-Jimenez , Emilio Artacho

The isothermal, isobaric spontaneous crystallization of a supercooled polymer melt is investigated by MD simulation of an ensemble of fully-flexible linear chains. Frustration is introduced via two incommensurate length scales set by the…

Soft Condensed Matter · Physics 2018-11-19 Andrea Giuntoli , Sebastiano Bernini , Dino Leporini

This is the first paper about the fragmentation and mass outflow in the molecular cloud by using three-dimensional MHD nested-grid simulations. The binary star formation process is studied paying particular attention to the fragmentation of…

Astrophysics · Physics 2009-11-10 Masahiro N Machida , Kohji Tomisaka , Tomoaki Matsumoto

Collagen is a key structural protein in the human body, which undergoes mineralization during the formation of hard tissues. Earlier studies have described the mechanical behavior of bone at different scales highlighting material features…

Applied Physics · Physics 2021-07-02 Mario Milazzo , Gang Seob Jung , Serena Danti , Markus J. Buehler

In this paper we study noise-induced bistability in a specific circuit with many biological implications, namely a single-step enzymatic cycle described by Michaelis Menten equations with quasi-steady state assumption. We study the system…

Biological Physics · Physics 2011-07-25 Daniel Remondini , Enrico Giampieri , Armando Bazzani , Gastone Castellani , Amos Maritan

Electron microscopy and X-ray diffraction studies of dormant E. coli cells revealed several forms of nucleoid condensation: quasi - nanocrystalline, quasi -liquid crystalline (or spore-like) and folded nucleosome - like structure. Of…

Experiments have widely shown that a steady-state lamellar eutectic solidification front is destabilized on a scale much larger than the lamellar spacing by the rejection of a dilute ternary impurity and forms two-phase cells commonly…

Materials Science · Physics 2009-10-31 Mathis Plapp , Alain Karma

We present idealized numerical simulations of prestellar gravitational collapse of a moderate initial filamentary perturbation with an additional central ellipsoidal enhancement (a core) considering a uniform, and a stratified background,…

Astrophysics of Galaxies · Physics 2022-01-12 Raúl Naranjo-Romero , Enrique Vázquez-Semadeni , Robert M. Loughnane

We quantify the effect of Gaussian white noise on fast--slow dynamical systems with one fast and two slow variables, which display mixed-mode oscillations owing to the presence of a folded-node singularity. The stochastic system can be…

Dynamical Systems · Mathematics 2015-03-06 Nils Berglund , Barbara Gentz , Christian Kuehn

We describe a series of experiments involving the creation of cylindrical packings of star-shaped particles, and an exploration of the stability of these packings. The stars cover a broad range of arm sizes and frictional properties. We…

Soft Condensed Matter · Physics 2020-02-25 Yuchen Zhao , Kevin Liu , Matthew Zheng , Jonathan Barés , Karola Dierichs , Achim Menges , Robert P. Behringer

We experimentally study the frictional behavior of a two-dimensional slider pulled slowly over a granular substrate comprised of photoelastic disks. The slider is vibrated at frequencies ranging from 0 to 30 Hz in a direction parallel to…

Soft Condensed Matter · Physics 2018-12-18 Abram H. Clark , Robert P. Behringer , Jacqueline Krim

We present a fluid-mechanical model of the coalescence of a number of elastic objects due to surface tension. We consider an array of spring-block elements separated by thin liquid films, whose dynamics are modelled using lubrication…

Fluid Dynamics · Physics 2014-04-16 Kiran Singh , John R. Lister , Dominic Vella

The nonlinear decay of oscillations of a liquid column in a U-shaped tube is investigated within the theoretical framework of the projection method formalized by Bongarzone et al. (2021) [1]. Starting from the full hydrodynamic system…

Fluid Dynamics · Physics 2023-11-17 Alessandro Bongarzone , François Gallaire

We report the splitting of an oscillating DNA circuit into $\sim 700$ droplets with picoliter volumes. Upon incubation at constant temperature, the droplets display sustained oscillations that can be observed for more than a day.…

The slip system activity in microtensile tests of ferrite single crystals is compared with predictions made by the discrete slip plane model proposed by Wijnen et al. (International Journal of Solids and Structures 228, 111094, 2021). This…

Materials Science · Physics 2024-02-23 J. Wijnen , J. P. M. Hoefnagels , M. G. D. Geers , R. H. J. Peerlings

Even the most regular stick-slip frictional sliding is always stochastic, with irregularity in both the intervals between slip events and the sizes of the associated stress drops. Applying small-amplitude oscillations to the shear force, we…

Soft Condensed Matter · Physics 2015-05-27 Rosario Capozza , Shmuel M. Rubinstein , Itay Barel , Michael Urbakh , Jay Fineberg

Motile bacteria can migrate along chemical gradients in a process known as chemotaxis. When exposed to uniform environmental stress, Escherichia coli cells coordinate their chemotactic responses to form millimeter-sized condensates…

Biological Physics · Physics 2025-05-02 Nir Livne , Ady Vaknin , Oded Agam

Tendon-sheath mechanisms (TSMs) are widely used in minimally invasive surgical (MIS) applications, but their inherent hysteresis-caused by friction, backlash, and tendon elongation-leads to significant tracking errors. Conventional modeling…

Robotics · Computer Science 2025-03-05 Myeongbo Park , Chunggil An , Junhyun Park , Jonghyun Kang , Minho Hwang

This study focuses on comparing the individual polymer chain dynamics in an entangled polymeric liquid under different shear and extension rates. Polymer chains under various shear rates and extension rates were simulated using a…

Chemical Physics · Physics 2021-01-15 Behrouz Behdani , Tong Mou , Cody Spratt , Slava Butcovich , Ryan Gettler , Joontaek Park