English
Related papers

Related papers: Stuttering Min oscillations within E. coli bacteri…

200 papers

The chemotaxis pathway in the bacterium Escherichia coli allows cells to detect changes in external ligand concentration (e.g. nutrients). The pathway regulates the flagellated rotary motors and hence the cells' swimming behaviour, steering…

Cell Behavior · Quantitative Biology 2011-03-04 Diana Clausznitzer , Robert G Endres

Fluid-structure simulations of slender inextensible filaments in a viscous fluid are often plagued by numerical stiffness. Recent coarse-graining studies have reduced the computational requirements of simulating such systems, though have…

Fluid Dynamics · Physics 2021-01-04 Benjamin J. Walker , Kenta Ishimoto , Eamonn A. Gaffney

The behaviour of semi-dilute wormlike micelle solutions under vertical vibrations is investigated using classical measurements of the Faraday instability threshold along with two new experiments based on particle imaging velocimetry and…

Fluid Dynamics · Physics 2009-09-30 P. Ballesta , S. Manneville

Gliding is a means of locomotion on rigid substrates utilized by a number of bacteria includingmyxobacteria and cyanobacteria. One of the hypotheses advanced to explain this motility mechanism hinges on the role played by the slime…

Biological Physics · Physics 2015-03-02 Epifanio G. Virga

We report a novel mode of oscillatory crack propagation when a cutting tip is driven through a thin brittle polymer film. The phenomenon is so robust that it can easily be reproduced at hand (using CD packaging material for example).…

Condensed Matter · Physics 2020-07-14 Benoit Roman , Pedro M. Reis , Basile Audoly , Simon De Villiers , Vincent Viguie , Denis Vallet

By combining analytical theory and Molecular Dynamics simulations we study the relaxation dynamics of DNA circular plasmids that initially undergo a local twist perturbation. We identify three distinctive time scales; (I) a rapid relaxation…

Soft Condensed Matter · Physics 2025-02-03 Yair Augusto Gutierrez Fosado , Fabio Landuzzi , Takahiro Sakaue

While a significant body of investigations have been focused on the process of protein self-assembly, much less is understood about the reverse process of a filament breaking due to thermal motion into smaller fragments, or depolymerization…

Soft Condensed Matter · Physics 2016-09-19 A. Zaccone , I. Terentjev , T. W. Herling , T. P. J. Knowles , A. Aleksandrova , E. M. Terentjev

We report the phenomenon of periodic shape oscillations occurring in 3T3 fibroblasts merely as a consequence of a loss of cell-substrate adhesion. The oscillatory behavior can last many hours at a constant frequency, and can be switched off…

Biological Physics · Physics 2007-05-23 Pramod A Pullarkat

We revisit our original papers on the burst mode of accretion by incorporating a detailed energy balance equation into a thin-disk model for the formation and evolution of circumstellar disks around low-mass protostars.Our model includes…

Solar and Stellar Astrophysics · Physics 2015-05-19 Eduard I. Vorobyov , Shantanu Basu

We investigate the effective friction encountered by a mass sliding on a granular layer as a function of bed thickness and boundary roughness conditions. The observed friction has minima for a small number of layers before it increases and…

Soft Condensed Matter · Physics 2009-11-11 Saloome Siavoshi , Ashish V. Orpe , Arshad Kudrolli

We study here the spontaneous clustering of a submonolayer of grains under horizontal circular shaking. The clustering of grains occurs when increasing the oscillation amplitude beyond a threshold. The dense area travels in a circular…

Soft Condensed Matter · Physics 2021-08-06 Song-Chuan Zhao , Thorsten Pöschel

Stars of low and intermediate mass that exhibit oscillations may show tens of detectable oscillation modes each. Oscillation modes are a powerful to constrain the internal structure and rotational dynamics of the star, hence tool allowing…

Instrumentation and Methods for Astrophysics · Physics 2020-09-02 E. Corsaro , J. M. McKeever , J. S. Kuszlewicz

We develop a numerical framework to simulate the locomotion of a flagellated bacterium with a spheroidal head (such as Escherichia coli) in biological fluids like mucus, which are entangled polymer solutions exhibiting elasto-viscoplastic…

Fluid Dynamics · Physics 2026-04-01 Arjun Sharma , Sabarish V. Narayanan , Sarah Hormozi , Donald L. Koch

We present a fast, high-throughput method for characterizing the motility of microorganisms in 3D based on standard imaging microscopy. Instead of tracking individual cells, we analyse the spatio-temporal fluctuations of the intensity in…

Navigation of microorganisms is controlled by internal processes ultimately sensitive to mechanical or chemical signaling encountered along the path. In many natural environments, such as porous soils or physiological ducts, motile species…

In recent years, there were studies on the omnipresence and structures of filaments in star-forming regions, and the role of their fragmentation in the process of star formation. However, only a few studies analysed the evolution of…

Astrophysics of Galaxies · Physics 2018-06-07 Roxana-Adela Chira

A wide spectrum of Peritrichous bacteria undergo considerable physiological changes when they are inoculated onto nutrition-rich surfaces and exhibit a rapid and collective migration denoted as swarming. Thereby, the length of such swarmer…

Biological Physics · Physics 2016-10-25 Thomas Eisenstecken , Jinglei Hu , Roland G. Winkler

Self-organized dynamic patterns in dense active matter are striking manifestations of non-equilibrium physics. A prominent example is the macroscopic elliptical motion observed in quasi-2D bacterial suspensions, which has lacked a physical…

Soft Condensed Matter · Physics 2026-03-30 Bing Miao , Lei-Han Tang

We study the onset of spontaneous dynamics in the follower force model of an active filament, wherein a slender elastic filament in a viscous liquid is clamped normal to a wall at one end and subjected to a tangential compressive force at…

Fluid Dynamics · Physics 2025-04-02 Ory Schnitzer

The aim of the present paper is the study of the entropic elasticity of the dsDNA molecule, having a cristallographic length L of the order of 10 to 30 persistence lengths A, when it is subject to spatial obstructions. We have not tried to…

Soft Condensed Matter · Physics 2009-11-11 C. Bouchiat