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Related papers: Stuttering Min oscillations within E. coli bacteri…

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We introduce a three-dimensional stochastic reaction-diffusion model to describe MinD/MinE dynamical structures in Escherichia coli. This model spontaneously generates pole-to-pole oscillations of the membrane-associated MinD proteins, MinE…

Subcellular Processes · Quantitative Biology 2007-05-23 Nenad Pavin , Hana Cipcic Paljetak , Vladimir Krstic

We model the self-organization of the MinE ring that is observed during subcellular oscillations of the proteins MinD and MinE within the rod-shaped bacterium {\it Escherichia coli}. With a steady-state approximation, we can study the…

Subcellular Processes · Quantitative Biology 2009-06-10 Julien Derr , Jason T. Hopper , Anirban Sain , Andrew D. Rutenberg

The Min system in Escherichia coli directs division to the centre of the cell through pole-to-pole oscillations of the MinCDE proteins. We present a one dimensional stochastic model of these oscillations which incorporates membrane…

Subcellular Processes · Quantitative Biology 2007-05-23 Filipe Tostevin , Martin Howard

The spatiotemporal oscillations of the Min proteins in the bacterium Escherichia coli play an important role in cell division. A number of different models have been proposed to explain the dynamics from the underlying biochemistry. Here,…

Subcellular Processes · Quantitative Biology 2013-05-29 Peter Borowski , Eric N. Cytrynbaum

In the bacterium Escherichia coli, selection of the division site involves pole-to-pole oscillations of the proteins MinD and MinE. Different oscillation mechanisms based on cooperative effects between Min-proteins and on the exchange of…

Subcellular Processes · Quantitative Biology 2010-08-17 G. Meacci , J. Ries , E. Fischer-Friedrich , N. Kahya , P. Schwille , K. Kruse

Ongoing sub-cellular oscillation of Min proteins is required to block minicelling in E. coli. Experimentally, Min oscillations are seen in newly divided cells and no minicells are produced. In model Min systems many daughter cells do not…

Subcellular Processes · Quantitative Biology 2009-11-13 Supratim Sengupta , Andrew D. Rutenberg

A mathematical model of Min oscillation in Escherichia coli is numerically studied. The oscillatory state and hysteretic transition are explained with simpler coupled differential equations. Next, we propose a simple model of cell growth…

Adaptation and Self-Organizing Systems · Physics 2019-10-23 Hidetsugu Sakaguchi , Yuka Kawasaki

The spatiotemporal oscillation patterns of the proteins MinD and MinE are used by the bacterium E. coli to sense its own geometry. Strikingly, both computer simulations and experiments have recently shown that for the same geometry of the…

Subcellular Processes · Quantitative Biology 2016-10-18 Artemij Amiranashvili , Nikolas D Schnellbächer , Ulrich S Schwarz

Positioning of the midcell division plane within the bacterium E. coli is controlled by the min system of proteins: MinC, MinD and MinE. These proteins coherently oscillate from end to end of the bacterium. We present a reaction--diffusion…

Soft Condensed Matter · Physics 2009-11-07 Martin Howard , Andrew D. Rutenberg , Simon de Vet

In E. coli, accurate cell division depends upon the oscillation of Min proteins from pole to pole. We provide a model for the polar localization of MinD based only on diffusion, a delay for nucleotide exchange, and different rates of…

Subcellular Processes · Quantitative Biology 2009-11-10 Rahul V. Kulkarni , Kerwyn Casey Huang , Morten Kloster , Ned S. Wingreen

During division it is of primary importance for a cell to correctly determine the site of cleavage. The bacterium Escherichia coli divides in the center, producing two daughter cells of equal size. Selection of the center as the correct…

Subcellular Processes · Quantitative Biology 2007-05-23 G. Meacci , K. Kruse

We examine fluctuation effects due to the low copy number of proteins involved in pattern-forming dynamics within a bacterium. We focus on a stochastic model of the oscillating MinCDE protein system regulating accurate cell division in E.…

Statistical Mechanics · Physics 2009-11-10 Martin Howard , Andrew D. Rutenberg

In E. coli the determination of the middle of the cell and the proper placement of the septum is essential to the division of the cell. This step depends on the proteins MinC, MinD, and MinE. Exposure to a constant external field e.g., an…

Subcellular Processes · Quantitative Biology 2007-05-23 Paisan Kanthang , Waipot Ngamsaad , Charin Modchang , Wannapong Triampo , Narin Nuttawut , I-Ming Tang , Yongwimol Lenbury

Escherichia coli and other bacteria use rotating helical filaments to swim. Each cell typically has about four filaments, which bundle or disperse depending on the sense of motor rotation. To study the bundling process, we built a…

Soft Condensed Matter · Physics 2009-11-10 MunJu Kim , James C. Bird , Annemarie J. Van Parys , Kenneth S. Breuer , Thomas R. Powers

We study the dynamics of a spherical steel ball falling freely through a solution of entangled wormlike-micelles. If the sphere diameter is larger than a threshold value, the settling velocity shows repeated short oscillatory bursts…

Soft Condensed Matter · Physics 2012-03-29 Nitin Kumar , Sayantan Majumdar , Aditya Sood , Rama Govindarajan , Sriram Ramaswamy , A. K. Sood

Self-organization of proteins in space and time is of crucial importance for the functioning of cellular processes. Often, this organization takes place in the presence of strong random fluctuations due to the small number of molecules…

Subcellular Processes · Quantitative Biology 2010-09-22 Elisabeth Fischer-Friedrich , Giovanni Meacci , Joe Lutkenhaus , Hugues Chate , Karsten Kruse

Run-and-tumble motility is widely used by swimming microorganisms including numerous prokaryotic eukaryotic organisms. Here, we experimentally investigate the run-and-tumble dynamics of the bacterium E. coli in polymeric solutions. We find…

Fluid Dynamics · Physics 2015-11-04 A. E. Patteson , A. Gopinath , M. Goulian , P. E. Arratia

Recent numerical and theoretical considerations have shown that low-degree acoustic modes in rapidly rotating stars follow an asymptotic formula and recent observations of pulsations in rapidly rotating delta Scuti stars seem to match these…

Solar and Stellar Astrophysics · Physics 2021-01-06 D. R. Reese , G. M. Mirouh , F. Espinosa Lara , M. Rieutord , B. Putigny

The effects of a driven fast-oscillating spinneret on the bending instability of electrified jets, leading to the formation of spiral structures in electrospinning experiments with charged polymers, are explored by means of extensive…

Fluid Dynamics · Physics 2014-12-04 Ivan Coluzza , Dario Pisignano , Daniele Gentili , Giuseppe Pontrelli , Sauro Succi

In this work, we analyse the stick-slip motion of a soft elastomeric block on a smooth, hard surface under the application of shear, which is induced by a puller moving at a steady velocity. The frictional stress is generated by make-break…

Soft Condensed Matter · Physics 2024-05-24 Vinay A. Juvekar , Arun K. Singh
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