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The modular decomposition of a symmetric map $\delta\colon X\times X \to \Upsilon$ (or, equivalently, a set of symmetric binary relations, a 2-structure, or an edge-colored undirected graph) is a natural construction to capture key features…

Combinatorics · Mathematics 2021-03-12 Carmen Bruckmann , Peter F. Stadler , Marc Hellmuth

A fibration of graphs is an homomorphism that is a local isomorphism of in-neighbourhoods, much in the same way a covering projection is a local isomorphism of neighbourhoods. Recently, it has been shown that graph fibrations are useful…

Quantitative Methods · Quantitative Biology 2022-11-23 Paolo Boldi , Ian Leifer , Hernán A. Makse

This paper develops an algorithm that identifies and decomposes a median graph of a triangulation of a 2-dimensional (2D) oriented bordered surface and in addition restores all corresponding triangulation whenever they exist. The algorithm…

Combinatorics · Mathematics 2010-07-13 Weiwen Gu

Symmetry breaking for graphs and other combinatorial objects is notoriously hard. On the one hand, complete symmetry breaks are exponential in size. On the other hand, current, state-of-the-art, partial symmetry breaks are often considered…

Logic in Computer Science · Computer Science 2026-04-01 Michael Codish , Mikoláš Janota

We present an exact algorithm for computing all common subgraphs with the maximum number of vertices across multiple graphs. Our approach is further extended to handle the connected Maximum Common Subgraph (MCS), identifying the largest…

Data Structures and Algorithms · Computer Science 2025-04-03 Johannes B. S. Petersen , Akbar Davoodi , Thomas Gärtner , Marc Hellmuth , Daniel Merkle

The construction of cut trees (also known as Gomory-Hu trees) for a given graph enables the minimum-cut size of the original graph to be obtained for any pair of vertices. Cut trees are a powerful back-end for graph management and mining,…

Data Structures and Algorithms · Computer Science 2016-09-29 Takuya Akiba , Yoichi Iwata , Yosuke Sameshima , Naoto Mizuno , Yosuke Yano

A cocomparability graph is a graph whose complement admits a transitive orientation. An interval graph is the intersection graph of a family of intervals on the real line. In this paper we investigate the relationships between interval and…

Discrete Mathematics · Computer Science 2016-11-08 Jérémie Dusart , Michel Habib , Derek G. Corneil

We introduce block-tree graphs as a framework for deriving efficient algorithms on graphical models. We define block-tree graphs as a tree-structured graph where each node is a cluster of nodes such that the clusters in the graph are…

Machine Learning · Statistics 2010-11-16 Divyanshu Vats , Jose M. F. Moura

We introduce a new distributed algorithm for aligning graphs or finding substructures within a given graph. It is based on the cavity method and is used to study the maximum-clique and the graph-alignment problems in random graphs. The…

Quantitative Methods · Quantitative Biology 2010-04-02 S. Bradde , A. Braunstein , H. Mahmoudi , F. Tria , M. Weigt , R. Zecchina

In this paper, we present two main results. First, by only one conjecture (Conjecture 2.9) for recognizing a vertex symmetric graph, which is the hardest task for our problem, we construct an algorithm for finding an isomorphism between two…

Data Structures and Algorithms · Computer Science 2017-06-29 Caishi Fang

It is known that any chordal graph on $n$ vertices can be represented as the intersection of $n$ subtrees in a tree on $n$ nodes. This fact is recently used in [2] to generate random chordal graphs on $n$ vertices by generating $n$ subtrees…

Data Structures and Algorithms · Computer Science 2019-05-20 Tınaz Ekim , Mordechai Shalom , Oylum Şeker

Hierarchical structure and repetition are prevalent in graphs originating from nature or engineering. These patterns can be represented by a class of parametric-structure graphs, which are defined by templates that generate structure by way…

Data Structures and Algorithms · Computer Science 2020-11-16 Tal Ben-Nun , Lukas Gianinazzi , Torsten Hoefler , Yishai Oltchik

We define the \emph{visual complexity} of a plane graph drawing to be the number of basic geometric objects needed to represent all its edges. In particular, one object may represent multiple edges (e.g., one needs only one line segment to…

Computational Geometry · Computer Science 2018-09-10 Gregor Hültenschmidt , Philipp Kindermann , Wouter Meulemans , André Schulz

We consider a refinement of the partition function of graph homomorphisms and present a quasi-polynomial algorithm to compute it in a certain domain. As a corollary, we obtain quasi-polynomial algorithms for computing partition functions…

Combinatorics · Mathematics 2015-08-04 Alexander Barvinok , Pablo Soberón

Statistical analysis of large and sparse graphs is a challenging problem in data science due to the high dimensionality and nonlinearity of the problem. This paper presents a fast and scalable algorithm for partitioning such graphs into…

Data Structures and Algorithms · Computer Science 2018-12-24 Hannu Reittu , Lasse Leskelä , Tomi Räty , Marco Fiorucci

Graph algorithms applied in many applications, including social networks, communication networks, VLSI design, graphics, and several others, require dynamic modifications -- addition and removal of vertices and/or edges -- in the graph.…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-01-16 Bapi Chatterjee , Sathya Peri , Muktikanta Sa , Nandini Singhal

In the graph clustering problem with a planted solution, the input is a graph on $n$ vertices partitioned into $k$ clusters, and the task is to infer the clusters from graph structure. A standard assumption is that clusters induce…

Data Structures and Algorithms · Computer Science 2025-11-24 Hendrik Fichtenberger , Michael Kapralov , Ekaterina Kochetkova , Silvio Lattanzi , Davide Mazzali , Weronika Wrzos-Kaminska

We present a quasi linear-time algorithm for Maximum Matching on distance-hereditary graphs and some of their generalizations. This improves on [Dragan, WG'97], who proposed such an algorithm for the subclass of (tent,hexahedron)-free…

Data Structures and Algorithms · Computer Science 2018-04-26 Guillaume Ducoffe , Alexandru Popa

Given a set $\Sg$ of bipartitions of some finite set $X$ of cardinality at least 2, one can associate to $\Sg$ a canonical $X$-labeled graph $\B(\Sg)$, called the Buneman graph. This graph has several interesting mathematical properties -…

Combinatorics · Mathematics 2011-01-26 A. W. W. Dress , K. T. Huber , J. Koolen , V. Moulton

Let $G$ be an $n$-vertex graph with $m$ edges. When asked a subset $S$ of vertices, a cut query on $G$ returns the number of edges of $G$ that have exactly one endpoint in $S$. We show that there is a bounded-error quantum algorithm that…

Data Structures and Algorithms · Computer Science 2020-08-05 Troy Lee , Miklos Santha , Shengyu Zhang