Related papers: Recognizing Treelike k-Dissimilarities

To study the structure of solutions for random k-SAT and random CSPs, this paper introduces the concept of average similarity degree to characterize how solutions are similar to each other. It is proved that under certain conditions, as r…

The input to the agreement problem is a collection $P = \{T_1, T_2, \dots , T_k\}$ of phylogenetic trees, called input trees, over partially overlapping sets of taxa. The question is whether there exists a tree $T$, called an agreement…

In this paper, we study some spanning trees with bounded degree and leaf degree from eigenvalues. For any integer $k\geq2$, a $k$-tree is a spanning tree in which every vertex has degree no more than $k$. Let $T$ be a spanning tree of a…

Background: Tree reconciliation problems have long been studied in phylogenetics. A particular variant of the reconciliation problem for a gene tree T and a species tree S assumes that for each interior vertex x of T it is known whether x…

Let $X_{2k}$ be a set of $2k$ labeled points in convex position in the plane. We consider geometric non-intersecting straight-line perfect matchings of $X_{2k}$. Two such matchings, $M$ and $M'$, are disjoint compatible if they do not have…

Betweenness centrality of a vertex in a graph measures the fraction of shortest paths going through the vertex. This is a basic notion for determining the importance of a vertex in a network. The k-betweenness centrality of a vertex is…

A tree is called k-ended tree if it has at most k leaves, where a leaf is a vertex of degree one. In this paper we prove that every 3-regular connected graph with n vertices such that n is greater than 8 has spanning sub tree with at most…

An out-tree $T$ of a directed graph $D$ is a rooted tree subgraph with all arcs directed outwards from the root. An out-branching is a spanning out-tree. By $l(D)$ and $l_s(D)$ we denote the maximum number of leaves over all out-trees and…

Several classification methods assume that the underlying distributions follow tree-structured graphical models. Indeed, trees capture statistical dependencies between pairs of variables, which may be crucial to attain low classification…

An $\alpha$-thin tree $T$ of a graph $G$ is a spanning tree such that every cut of $G$ has at most an $\alpha$ proportion of its edges in $T$. The Thin Tree Conjecture proposes that there exists a function $f$ such that for any $\alpha >…

We consider extremal problems related to decks and multidecks of rooted binary trees (a.k.a. rooted phylogenetic tree shapes). Here, the deck (resp. multideck) of a tree $T$ refers to the set (resp. multiset) of leaf induced binary subtrees…

We answer a recent question of Cs\'oka and Vidny\'anszky [arXiv:2407.10006] and give an alternate proof of one of their results. The subject of both is which finite graphs admit factor of i.i.d. homomorphisms from the 3-regular tree. We…

We develop the theory of ``branch algebras'', which are infinite-dimensional associative algebras that are isomorphic, up to taking subrings of finite codimension, to a matrix ring over themselves. The main examples come from groups acting…

We define an all-$k$-isolating set of a graph to be a set $S$ of vertices such that, if one removes $S$ and all its neighbors, then no component in what remains has order $k$ or more. The case $k=1$ corresponds to a dominating set and the…

Let T be a weighted tree with n leaves. Let D_{i,j} be the distance between the leaves i and j. Let D_{i,j,k}= (D_{i,j} + D_{j,k} +D_{i,k})/2. We will call such numbers "triple weights" of the tree. In this paper, we give a…

This paper studies a 4-approximation algorithm for k-prize collecting Steiner tree problems. This problem generalizes both k-minimum spanning tree problems and prize collecting Steiner tree problems. Our proposed algorithm employs two…

We give an algorithm that takes as input an $n$-vertex graph $G$ and an integer $k$, runs in time $2^{O(k^2)} n^{O(1)}$, and outputs a tree decomposition of $G$ of width at most $k$, if such a decomposition exists. This resolves the…

Phylogenetic trees play a key role in the reconstruction of evolutionary relationships. Typically, they are derived from aligned sequence data (like DNA, RNA, or proteins) by using optimization criteria like, e.g., maximum parsimony (MP).…

Let $G$ be a 3-connected planar graph. Define the co-tree of a spanning tree $T$ of $G$ as the graph induced by the dual edges of $E(G)-E(T)$. The well-known cut-cycle duality implies that the co-tree is itself a tree. Let a $k$-tree be a…

We study distorted metrics on binary trees in the context of phylogenetic reconstruction. Given a binary tree $T$ on $n$ leaves with a path metric $d$, consider the pairwise distances $\{d(u,v)\}$ between leaves. It is well known that these…