English
Related papers

Related papers: Inference for reaction networks using the Linear N…

200 papers

It is well known, mainly because of the work of Kurtz, that density dependent Markov chains can be approximated by sets of ordinary differential equations (ODEs) when their indexing parameter grows very large. This approximation cannot…

Performance · Computer Science 2014-04-04 Marco Beccuti , Enrico Bibbona , Andras Horvath , Roberta Sirovich , Alessio Angius , Gianfranco Balbo

To generate data from trained diffusion models, most inference algorithms, such as DDPM, DDIM, and other variants, rely on discretizing the reverse SDEs or their equivalent ODEs. In this paper, we view such approaches as decomposing the…

Machine Learning · Statistics 2024-05-28 Xunpeng Huang , Difan Zou , Hanze Dong , Yi Zhang , Yi-An Ma , Tong Zhang

Link adaptation (LA) is an essential function in modern wireless communication systems that dynamically adjusts the transmission rate of a communication link to match time- and frequency-varying radio link conditions. However, factors such…

Machine Learning · Computer Science 2024-12-02 Samuele Peri , Alessio Russo , Gabor Fodor , Pablo Soldati

Contextual sparsity is one of the approaches used to reduce computational complexity in the inference process of large language models (LLMs). Existing techniques for efficient LLM inference acceleration based on contextual sparsity with…

Machine Learning · Computer Science 2026-03-17 Georgii Serbin , Kirill Koshkin , Zhongao Sun , Anastasiya Bistrigova , C. C. Korikov

Conditional belief networks introduce stochastic binary variables in neural networks. Contrary to a classical neural network, a belief network can predict more than the expected value of the output $Y$ given the input $X$. It can predict a…

Machine Learning · Computer Science 2016-05-03 Yann N. Dauphin , David Grangier

Diffusion-based inverse algorithms have shown remarkable performance across various inverse problems, yet their reliance on numerous denoising steps incurs high computational costs. While recent developments of fast diffusion ODE solvers…

Computer Vision and Pattern Recognition · Computer Science 2025-10-22 Jiawei Zhang , Ziyuan Liu , Leon Yan , Gen Li , Yuantao Gu

Network inference approaches are now widely used in biological applications to probe regulatory relationships between molecular components such as genes or proteins. Many methods have been proposed for this setting, but the connections and…

Applications · Statistics 2014-06-03 Chris. J. Oates , Sach Mukherjee

The development of chemical reaction models aids understanding and prediction in areas ranging from biology to electrochemistry and combustion. A systematic approach to building reaction network models uses observational data not only to…

Computational Engineering, Finance, and Science · Computer Science 2019-01-23 Nikhil Galagali , Youssef M. Marzouk

We propose a generative model and an inference scheme for epidemic processes on dynamic, adaptive contact networks. Network evolution is formulated as a link-Markovian process, which is then coupled to an individual-level stochastic SIR…

Methodology · Statistics 2020-04-07 Fan Bu , Allison E. Aiello , Jason Xu , Alexander Volfovsky

We consider the estimation of a non-linear reaction term in the stochastic heat or more generally in a semi-linear stochastic partial differential equation (SPDE). Consistent inference is achieved by studying a small diffusivity level,…

Statistics Theory · Mathematics 2022-03-22 Sascha Gaudlitz , Markus Reiß

High-dimensional inference methods often rely on coefficient sparsity, an assumption that can be restrictive when signals are dense but individually weak. In such settings, valid inference may still be possible if the covariates exhibit…

Methodology · Statistics 2026-04-14 Wenjun Xiong , Yan Chen , Mingya Long , Qizhai Li

Residual networks are an Euler discretization of solutions to Ordinary Differential Equations (ODE). This paper explores a deeper relationship between Transformer and numerical ODE methods. We first show that a residual block of layers in…

Computation and Language · Computer Science 2022-04-13 Bei Li , Quan Du , Tao Zhou , Yi Jing , Shuhan Zhou , Xin Zeng , Tong Xiao , JingBo Zhu , Xuebo Liu , Min Zhang

This paper presents the Standalone Neural ODE (sNODE), a continuous-depth neural ODE model capable of describing a full deep neural network. This uses a novel nonlinear conjugate gradient (NCG) descent optimization scheme for training,…

Machine Learning · Computer Science 2022-06-09 Rym Jaroudi , Lukáš Malý , Gabriel Eilertsen , B. Tomas Johansson , Jonas Unger , George Baravdish

The data-driven discovery of interpretable models approximating the underlying dynamics of a physical system has gained attraction in the past decade. Current approaches employ pre-specified functional forms or basis functions and often…

Machine Learning · Computer Science 2025-07-30 Rahul Golder , M. M. Faruque Hasan

In orthogonal frequency division multiplexing (OFDM), accurate channel estimation is crucial. Classical signal processing-based approaches, such as linear minimum mean-squared error (LMMSE) estimation, often require second-order statistics…

Signal Processing · Electrical Eng. & Systems 2026-01-28 TaeJun Ha , Chaehyun Jung , Hyeonuk Kim , Jeongwoo Park , Jeonghun Park

We show that discrete distributions on the $d$-dimensional non-negative integer lattice can be approximated arbitrarily well via the marginals of stationary distributions for various classes of stochastic chemical reaction networks. We…

Computational Complexity · Computer Science 2019-10-01 Daniele Cappelletti , Andrés Ortiz-Muñoz , David Anderson , Erik Winfree

Statistical models can involve implicitly defined quantities, such as solutions to nonlinear ordinary differential equations (ODEs), that unavoidably need to be numerically approximated in order to evaluate the model. The approximation…

Computation · Statistics 2024-09-16 Juho Timonen , Nikolas Siccha , Ben Bales , Harri Lähdesmäki , Aki Vehtari

Likelihood-based inference in stochastic non-linear dynamical systems, such as those found in chemical reaction networks and biological clock systems, is inherently complex and has largely been limited to small and unrealistically simple…

Computation · Statistics 2024-07-08 Ben Swallow , David A. Rand , Giorgos Minas

Sparse regression has been a popular approach to perform variable selection and enhance the prediction accuracy and interpretability of the resulting statistical model. Existing approaches focus on offline regularized regression, while the…

Machine Learning · Statistics 2023-01-03 Shuoguang Yang , Yuhao Yan , Xiuneng Zhu , Qiang Sun

Neural networks (NNs) and linear stochastic estimation (LSE) have widely been utilized as powerful tools for fluid-flow regressions. We investigate fundamental differences between them considering two canonical fluid-flow problems: 1. the…

Fluid Dynamics · Physics 2022-05-19 Taichi Nakamura , Kai Fukami , Koji Fukagata