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Cells must continuously sense and respond to time-varying environmental stimuli. These signals are transmitted and processed by biochemical signalling networks. However, the biochemical reactions making up these networks are intrinsically…

Molecular Networks · Quantitative Biology 2015-05-18 Filipe Tostevin , Pieter Rein ten Wolde

Quantum states of light are the obvious choice for communicating quantum information. To date, encoding information into the polarisation states of single photons has been widely used as these states form an natural closed two state qubit.…

Quantum Physics · Physics 2015-01-08 Peter P. Rohde , Joseph F. Fitzsimons , Alexei Gilchrist

Color Appearance Models are biological networks that consist of a cascade of linear+nonlinear layers that modify the linear measurements at the retinal photo-receptors leading to an internal (nonlinear) representation of color that…

Neurons and Cognition · Quantitative Biology 2022-10-13 Jesus Malo

We study open-ended evolution by focusing on computational and information-processing dynamics underlying major evolutionary transitions. In doing so, we consider biological organisms as hierarchical dynamical systems that generate…

Underwater communication is extremely challenging for small underwater robots which typically have stringent power and size constraints. In our previous work, we developed an artificial electrocommunication system which could be an…

Robotics · Computer Science 2020-08-25 Qinghao Wang , Ruijun Liu , Wei Wang , Guangming Xie

Cells are constantly exposed to fluctuating environmental conditions. External signals are sensed, processed and integrated by cellular signal transduction networks, which translate input signals into specific cellular responses by means of…

Molecular Networks · Quantitative Biology 2012-05-29 Pau Rué , Núria Domedel-Puig , Jordi Garcia-Ojalvo , Antonio J. Pons

A pair of coherent femtosecond pulse excitations applied to a molecule with strong electron-phonon coupling creates a coherent superposition of a low momentum and a high momentum wavepacket in the vibrational states of both the excited…

Quantum Physics · Physics 2009-11-06 Holger F. Hofmann , Takao Fuji , Takayoshi Kobayashi

Free-space optical information transfer through diffusive media is critical in many applications, such as biomedical devices and optical communication, but remains challenging due to random, unknown perturbations in the optical path. In…

Optics · Physics 2023-08-29 Yuhang Li , Tianyi Gan , Bijie Bai , Cagatay Isil , Mona Jarrahi , Aydogan Ozcan

Central to the functioning of a living cell is its ability to control the readout or expression of information encoded in the genome. In many cases, a single transcription factor protein activates or represses the expression of many genes.…

Molecular Networks · Quantitative Biology 2013-05-29 Aleksandra M. Walczak , Gapser Tkacik , William Bialek

The radiation dynamics of a dipole antenna embedded in a Photonic Crystal are modeled by an initially excited harmonic oscillator coupled to a non--Markovian bath of harmonic oscillators representing the colored electromagnetic vacuum…

Classical Physics · Physics 2009-11-06 Kurt Busch , Nipun Vats , Sajeev John , Barry C. Sanders

The mechanisms of echo-processing were investigated in our experiments, conducted on bottlenose dolphins. Hierarchically organized system of independent dimensions, describing echoes in animals perception, was revealed. The rules of…

Neurons and Cognition · Quantitative Biology 2014-01-02 Tengiz Zorikov

By engineering atomic geometries composed of nearly 1000 atomic segments embedded in micro-resonators we observe Bragg resonances induced by the atomic lattice at the telecommunication wavelength. The geometrical arrangement of erbium atoms…

This work aims at investigating the optical transmission system needed for such lightweight sail, taking into account the physical constraints of such unprecedented link and focusing on the optimal scheme for the optical signal emission. In…

Frequency-bin encoding furnishes a compelling pathway for quantum information processing systems compatible with established lightwave infrastructures based on fiber-optic transmission and wavelength-division multiplexing. Yet although…

Quantum Physics · Physics 2025-08-26 Karthik V. Myilswamy , Lucas M. Cohen , Suparna Seshadri , Hsuan-Hao Lu , Joseph M. Lukens

Many cells use calcium signalling to carry information from the extracellular side of the plasma membrane to targets in their interior. Since virtually all cells employ a network of biochemical reactions for Ca2+ signalling, much effort has…

Neurons and Cognition · Quantitative Biology 2009-12-17 Maurizio De Pitta` , Vladislav Volman , Herbert Levine , Eshel Ben-Jacob

Living systems are often described utilizing informational analogies. An important open question is whether information is merely a useful conceptual metaphor, or intrinsic to the operation of biological systems. To address this question,…

Molecular Networks · Quantitative Biology 2015-08-19 Hyunju Kim , Paul Davies , Sara Imari Walker

A previously unknown form of compromising emanations has been discovered. LED status indicators on data communication equipment, under certain conditions, are shown to carry a modulated optical signal that is significantly correlated with…

Cryptography and Security · Computer Science 2023-07-17 Joe Loughry , David A. Umphress

Biochemical networks can respond to temporal characteristics of time-varying signals. To understand how reliably biochemical networks can transmit information we must consider how an input signal as a function of time--the input…

Molecular Networks · Quantitative Biology 2015-05-13 Filipe Tostevin , Pieter Rein ten Wolde

We study light propagation in a photonic system that shows stepwise evolution in a discretized environment. It resembles a discrete-time version of photonic waveguide arrays or quantum walks. By introducing controlled photon losses to our…

Neural encoding of objects and cognitive states remains an elusive yet crucial aspect of brain function. While traditional feed-forward machine learning neural networks have enormous potential to encode information, modern architectures…

Neurons and Cognition · Quantitative Biology 2025-03-10 Alexander Pei
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