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Related papers: Two phase picture in driven polymer translocation

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When particles/molecules diffuse in systems that contain obstacles, the steady-state regime (during which the mean-square displacement scales linearly with time, $\left< r^2 \right> \sim t$) is preceded by a transient regime. It is common…

Biological Physics · Physics 2021-08-12 Nicholas Ilow , Gary W. Slater

Fluidisation is the process by which the weight of a bed of particles is supported by a gas flow passing through it from below. When fluidised materials flow down an incline, the dynamics of the motion differ from their non-fluidised…

Fluid Dynamics · Physics 2017-10-11 D. E. Jessop , A. J. Hogg , M. A. Gilbertson , C. Schoof

We review recent progress on the theory of dynamics of polymer translocation through a nanopore based on the iso-flux tension propagation (IFTP) theory. We investigate both pore-driven translocation of flexible and a semi-flexible polymers,…

Soft Condensed Matter · Physics 2018-10-16 Jalal Sarabadani , Tapio Ala-Nissila

We use numerical simulations to examine two-dimensional particle mixtures that strongly phase separate in equilibrium. When the system is externally driven in the presence of quenched disorder, plastic flow occurs in the form of meandering…

Statistical Mechanics · Physics 2009-11-13 A. Libal , C. Reichhardt , C. J. Olson Reichhardt

In this paper, a thermodynamically consistent phase-field model is proposed to describe the mass transport and reaction processes of multiple species in a fluid. A key feature of this model is that reactions between different species occur…

Numerical Analysis · Mathematics 2025-03-24 Zhaoyang Wang , Huaxiong Huang , Ping Lin , Shixin Xu

In this paper, we propose a new technique for two-dimensional phase unwrapping. The unwrapped phase is found as the solution of an inverse problem that consists in the minimization of an energy functional. The latter includes a weighted…

Many physical properties of small organic molecules are dependent on the current crystal packing, or polymorph, of the material, including bioavailability of pharmaceuticals, optical properties of dyes, and charge transport properties of…

Statistical Mechanics · Physics 2018-05-09 Natalie P. Schieber , Eric C. Dybeck , Michael R. Shirts

There is discussion if traffic displays multiple phases (e.g. laminar, jammed, synchronized) or not. This paper presents evidence that a stochastic car following model, by changing one of its parameters, can be moved from showing two phases…

Statistical Mechanics · Physics 2007-05-23 Dominic Jost , Kai Nagel

We present a novel method to investigate the dynamics of a single semiflexible polymer, subject to anisotropic friction in a viscous fluid. In contrast to previous approaches, we do not rely on a discrete bead-rod model, but introduce a…

Biomolecules · Quantitative Biology 2009-11-13 Tobias Munk , Oskar Hallatschek , Chris H. Wiggins , Erwin Frey

The diffuse medium in and around galaxies can exist in a multi-phase state: small, cold gas clouds contributing significantly to the total mass embedded in pressure equilibrium with a hotter, more diffuse volume-filling component. Modeling…

Astrophysics of Galaxies · Physics 2022-12-28 Rainer Weinberger , Lars Hernquist

We investigate the dynamics of polymer translocation through nanopores under external driving by 3D Langevin Dynamics simulations, focusing on the scaling of the average translocation time $\tau$ versus the length of the polymer, $\tau\sim…

Soft Condensed Matter · Physics 2010-01-04 Kaifu Luo , Tapio Ala-Nissila , See-Chen Ying , Ralf Metzler

Phase-field model is a powerful mathematical tool to study the dynamics of interface and morphology changes in fluid mechanics and material sciences. However, numerically solving a phase field model for a real problem is a challenge task…

Numerical Analysis · Mathematics 2019-09-04 Lin Wang , Haijun Yu

The theoretical formulation of driven polymer translocation through nanopores is complicated by the combination of the pore electrohydrodynamics and the nonequilibrium polymer dynamics originating from the conformational polymer…

Soft Condensed Matter · Physics 2019-01-15 Sahin Buyukdagli , Jalal Sarabadani , Tapio Ala-Nissila

We develop a method for modeling and simulating a class of two-phase flows consisting of two immiscible incompressible dielectric fluids and their interactions with imposed external electric fields in two and three dimensions. We first…

Numerical Analysis · Mathematics 2024-07-08 Jielin Yang , Ivan C. Christov , Suchuan Dong

We derive a two-dimensional symplectic map for particle motion at the plasma edge by modeling the electrostatic potential as a superposition of integer spatial harmonics with relative phase shift, then reduce it to a two-wave model to study…

Plasma Physics · Physics 2026-02-10 L. F. B. Souza , Y. Elskens , R. Egydio de Carvalho , I. L. Caldas

We propose a two fluid theory to model a dilute polymer solution assuming that it consists of two phases, polymer and solvent, with two distinct macroscopic velocities. The solvent phase velocity is governed by the macroscopic Navier-Stokes…

Mathematical Physics · Physics 2014-04-08 Pierre Degond , Alexei Lozinski , Robert G. Owens

We study the stabilization of coherent suppression of tunneling in a driven double-well system subject to random periodic $\delta-$function ``kicks''. We model dissipation due to this stochastic process as a phase diffusion process for an…

Quantum Physics · Physics 2009-11-06 J. Grondalski , P. M. Alsing , I. H. Deutsch

We present a method to control transport in Hamiltonian systems. We provide an algorithm - based on a perturbation of the original Hamiltonian localized in phase space - to design small control terms that are able to create isolated…

Chaotic Dynamics · Physics 2007-05-23 Guido Ciraolo , Cristel Chandre , Ricardo Lima , Michel Vittot , Marco Pettini , Philippe Ghendrih

The Schrodinger motion of a charged quantum particle in an electromagnetic potential can be simulated by the paraxial dynamics of photons propagating through a spatially inhomogeneous medium. The inhomogeneity induces geometric effects that…

Quantum Physics · Physics 2009-12-29 K. -P. Marzlin , Juergen Appel , A. I. Lvovsky

Several recent imaging experiments access the equilibrium density profiles of interacting particles confined to a two-dimensional substrate. When these particles are in a fluid phase, we show that such data yields precise information…

Disordered Systems and Neural Networks · Physics 2016-08-31 Ankush Sengupta , Surajit Sengupta , Gautam I. Menon