English
Related papers

Related papers: Using the Gene Ontology Hierarchy when Predicting …

200 papers

In many categorical response regression applications, the response categories admit a multiresolution structure. That is, subsets of the response categories may naturally be combined into coarser response categories. In such applications,…

Methodology · Statistics 2023-08-25 Aaron J. Molstad , Keshav Motwani

Motivation: Millions of genes in the modern species belong to only thousands of `gene families'. A gene family includes instances of the same gene in different species (orthologs) and duplicate genes in the same species (paralogs). Genes…

Populations and Evolution · Quantitative Biology 2012-05-04 Yu Zheng , Taoyang Wu , Louxin Zhang

Many important classification problems in the real-world consist of a large number of closely related categories in a hierarchical structure or taxonomy. Hierarchical multi-label text classification (HMTC) with higher accuracy over large…

Computation and Language · Computer Science 2022-04-19 Pengfei Gao , Jingpeng Zhao , Yinglong Ma , Ahmad Tanvir , Beihong Jin

Machine learning techniques for Recommendation System (RS) and Classification has become a prime focus of research to tackle the problem of information overload. RS are software tools that aim at making informed decisions about the services…

Information Retrieval · Computer Science 2019-07-30 Vikas Kumar

Images or videos always contain multiple objects or actions. Multi-label recognition has been witnessed to achieve pretty performance attribute to the rapid development of deep learning technologies. Recently, graph convolution network…

Computer Vision and Pattern Recognition · Computer Science 2019-11-22 Ya Wang , Dongliang He , Fu Li , Xiang Long , Zhichao Zhou , Jinwen Ma , Shilei Wen

As a fundamental problem in pattern recognition, graph matching has applications in a variety of fields, from computer vision to computational biology. In graph matching, patterns are modeled as graphs and pattern recognition amounts to…

Computer Vision and Pattern Recognition · Computer Science 2008-06-19 Tiberio S. Caetano , Julian J. McAuley , Li Cheng , Quoc V. Le , Alex J. Smola

The accuracy of deep neural networks is significantly influenced by the effectiveness of mini-batch construction during training. In single-label scenarios, such as binary and multi-class classification tasks, it has been demonstrated that…

Machine Learning · Computer Science 2024-12-24 Ao Zhou , Bin Liu , Jin Wang , Grigorios Tsoumakas

In recent years, multi-label classification has attracted a significant body of research, motivated by real-life applications, such as text classification and medical diagnoses. Although sparsely studied in this context, Learning Classifier…

Neural and Evolutionary Computing · Computer Science 2015-12-29 Fani A. Tzima , Miltiadis Allamanis , Alexandros Filotheou , Pericles A. Mitkas

Graph Neural Networks (GNNs) have been predominant for graph learning tasks; however, recent studies showed that a well-known graph algorithm, Label Propagation (LP), combined with a shallow neural network can achieve comparable performance…

Machine Learning · Computer Science 2022-12-01 Zhiqiang Zhong , Sergey Ivanov , Jun Pang

Online educational platforms organize academic questions based on a hierarchical learning taxonomy (subject-chapter-topic). Automatically tagging new questions with existing taxonomy will help organize these questions into different classes…

Computation and Language · Computer Science 2021-07-23 Venktesh V , Mukesh Mohania , Vikram Goyal

Quantification, variously called "supervised prevalence estimation" or "learning to quantify", is the supervised learning task of generating predictors of the relative frequencies (a.k.a. "prevalence values") of the classes of interest in…

Machine Learning · Computer Science 2022-11-16 Alejandro Moreo , Manuel Francisco , Fabrizio Sebastiani

In multi-label classification, each example in a dataset may be annotated as belonging to one or more classes (or none of the classes). Example applications include image (or document) tagging where each possible tag either applies to a…

Machine Learning · Computer Science 2022-11-28 Aditya Thyagarajan , Elías Snorrason , Curtis Northcutt , Jonas Mueller

The task of assigning label sequences to a set of observed sequences is common in computational linguistics. Several models for sequence labeling have been proposed over the last few years. Here, we focus on discriminative models for…

Machine Learning · Computer Science 2013-11-12 P. Balamurugan , Shirish Shevade , S. Sundararajan , S. S Keerthi

Multi-label image classification allows predicting a set of labels from a given image. Unlike multiclass classification, where only one label per image is assigned, such a setup is applicable for a broader range of applications. In this…

Computer Vision and Pattern Recognition · Computer Science 2022-12-21 Kirill Prokofiev , Vladislav Sovrasov

This thesis investigates the use of problem-specific knowledge to enhance a genetic algorithm approach to multiple-choice optimisation problems.It shows that such information can significantly enhance performance, but that the choice of…

Neural and Evolutionary Computing · Computer Science 2010-07-05 Uwe Aickelin

Even with the luxury of having abundant data, multi-label classification is widely known to be a challenging task to address. This work targets the problem of multi-label meta-learning, where a model learns to predict multiple labels within…

Computer Vision and Pattern Recognition · Computer Science 2021-10-27 Christian Simon , Piotr Koniusz , Mehrtash Harandi

Motivated by applications in protein function prediction, we consider a challenging supervised classification setting in which positive labels are scarce and there are no explicit negative labels. The learning algorithm must thus select…

Machine Learning · Computer Science 2019-01-28 Marco Frasca , Nicolò Cesa-Bianchi

We present a novel classification-based algorithm called GeneClass for learning to predict gene regulatory response. Our approach is motivated by the hypothesis that in simple organisms such as Saccharomyces cerevisiae, we can learn a…

Quantitative Methods · Quantitative Biology 2007-05-23 Manuel Middendorf , Anshul Kundaje , Chris Wiggins , Yoav Freund , Christina Leslie

Ontology matching is the process of automatically determining the semantic equivalences between the concepts of two ontologies. Most ontology matching algorithms are based on two types of strategies: terminology-based strategies, which…

Artificial Intelligence · Computer Science 2015-07-14 Shangpu Jiang , Daniel Lowd , Dejing Dou

Deep-learning based computer vision models have proved themselves to be ground-breaking approaches to human activity recognition (HAR). However, most existing works are dedicated to improve the prediction accuracy through either creating…

Computer Vision and Pattern Recognition · Computer Science 2021-02-04 Mahsun Altın , Furkan Gürsoy , Lina Xu