Related papers: Chain Rotations: a New Look at Tree Distance
A network for the transportation of supplies can be described as a rooted tree with a weight of a degree of congestion for each edge. We take the sum of root-leaf distance (SRD) on a rooted tree as the whole degree of congestion of the…
Given an $n$-point metric space $(X,d_X)$, a tree cover $\mathcal{T}$ is a set of $|\mathcal{T}|=k$ trees on $X$ such that every pair of vertices in $X$ has a low-distortion path in one of the trees in $\mathcal{T}$. Tree covers have been…
The problem of {\em efficiently} finding the best match for a query in a given set with respect to the Euclidean distance or the cosine similarity has been extensively studied in literature. However, a closely related problem of efficiently…
We present a comprehensive classical and parameterized complexity analysis of decision tree pruning operations, extending recent research on the complexity of learning small decision trees. Thereby, we offer new insights into the…
In 2001 Allen and Steel showed that, if subtree and chain reduction rules have been applied to two unrooted phylogenetic trees, the reduced trees will have at most 28k taxa where k is the TBR (Tree Bisection and Reconnection) distance…
Optimal transport (\OT) theory defines a powerful set of tools to compare probability distributions. \OT~suffers however from a few drawbacks, computational and statistical, which have encouraged the proposal of several regularized variants…
In this note, we give answers to three questions from the paper [A. Das, Triameter of graphs, Discuss. Math. Graph Theory, 41 (2021), 601--616]. Namely, we obtain a tight lower bound for the triameter of trees in terms of order and number…
A linear forest is a collection of vertex-disjoint paths. The Linear Arboricity Conjecture states that every graph of maximum degree $\Delta$ can be decomposed into at most $\lceil(\Delta+1)/2\rceil$ linear forests. We prove that $\Delta/2…
A set $S \subseteq V$ of the graph $G = (V, E)$ is called a $[1, 2]$-set of $G$ if any vertex which is not in $S$ has at least one but no more than two neighbors in $S$. A set $S \subseteq V$ is called a $[1, 2]$-total set of $G$ if any…
In phylogenetics, distances are often used to measure the incongruence between a pair of phylogenetic trees that are reconstructed by different methods or using different regions of genome. Motivated by the maximum parsimony principle in…
We consider here the problem of chaining seeds in ordered trees. Seeds are mappings between two trees Q and T and a chain is a subset of non overlapping seeds that is consistent with respect to postfix order and ancestrality. This problem…
We give algorithms to compute the Fr\'echet distance of trees and graphs with bounded tree width. Our algorithms run in $O(n^2)$ time for trees of bounded degree, and $O(n^2\sqrt{n \log n})$ time for trees of arbitrary degree. For graphs of…
We study questions inspired by Erd\H os' celebrated distance problems with dot products in lieu of distances, and for more than a single pair of points. In particular, we study point configurations present in large finite point sets in the…
We study the problem of finding a temporal hybridization network for a set of phylogenetic trees that minimizes the number of reticulations. First, we introduce an FPT algorithm for this problem on an arbitrary set of $m$ binary trees with…
Let $G$ be a simple graph. A dissociation set of $G$ is defined as a set of vertices that induces a subgraph in which every vertex has a degree of at most 1. A dissociation set is maximal if it is not contained as a proper subset in any…
A contraction sequence of a graph consists of iteratively merging two of its vertices until only one vertex remains. The recently introduced twin-width graph invariant is based on contraction sequences. More precisely, if one puts red edges…
Phylogenetic networks are a generalization of phylogenetic trees that allow for representation of reticulate evolution. Recently, a space of unrooted phylogenetic networks was introduced, where such a network is a connected graph in which…
We prove that every connected graph with $s$ vertices of degree~1 and 3 and $t$ vertices of degree at least~4 has a spanning tree with at least ${1\over 3}t +{1\over 4}s+{3\over 2}$ leaves. We present infinite series of graphs showing that…
Imitating a recently introduced invariant of trees, we initiate the study of the inducibility of $d$-ary trees (rooted trees whose vertex outdegrees are bounded from above by $d\geq 2$) with a given number of leaves. We determine the exact…
We prove that the complexity of the uniform first-order theory of ground tree rewrite graphs is in ATIME(2^{2^{poly(n)}},O(n)). Providing a matching lower bound, we show that there is some fixed ground tree rewrite graph whose first-order…