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Most particle induced X-ray emission (PIXE) data analysis codes are not focused on handling multilayered samples. We have developed an open-source library called "LibCPIXE", for PIXE data analysis. It is written in standard C and implements…
The Virus-MNIST data set is a collection of thumbnail images that is similar in style to the ubiquitous MNIST hand-written digits. These, however, are cast by reshaping possible malware code into an image array. Naturally, it is poised to…
Presented here is decryst, a software suite for structure determination from powder diffraction, which uses the direct space method, and is able to apply anti-bump constraints automatically and efficiently during the procedure of global…
The diagnosis of cancer is mainly performed by visual analysis of the pathologists, through examining the morphology of the tissue slices and the spatial arrangement of the cells. If the microscopic image of a specimen is not stained, it…
Multi-class colorectal tissue classification is a challenging problem that is typically addressed in a setting, where it is assumed that ample amounts of training data is available. However, manual annotation of fine-grained colorectal…
Background: Over the last years, more and more biological data became available. Besides the pure amount of new data, also its dimensionality - the number of different attributes per data point - increased. Recently, especially the amount…
The use of low-temperature detectors, such as cryogenic calorimeters, has pioneered the recent advancements in low-energy rare event searches. These detectors provide a low-noise environment essential for the direct detection of dark matter…
We present the software library libCreme which we have previously used to successfully calculate convex-roof entanglement measures of mixed quantum states appearing in realistic physical systems. Evaluating the amount of entanglement in…
Image-based experiments can yield many thousands of individual measurements describing each object of interest, such as cells in microscopy screens. CellProfiler Analyst is a free, open-source software package designed for the exploration…
The use of heuristics to assess the convergence and compress the output of Markov chain Monte Carlo can be sub-optimal in terms of the empirical approximations that are produced. Typically a number of the initial states are attributed to…
As a fundamental visual attribute, image complexity significantly influences both human perception and the performance of computer vision models. However, accurately assessing and quantifying image complexity remains a challenging task. (1)…
Line intensity mapping (LIM) is a technique for producing 3D maps of the Universe by scanning the sky with a spectrometer sensitive to a range of wavelengths corresponding to the redshifted spectral lines of atoms or molecules, such as…
Deep learning models can generate virtual immunohistochemistry (IHC) stains from hematoxylin and eosin (H&E) images, offering a scalable and low-cost alternative to laboratory IHC. However, reliable evaluation of image quality remains a…
Containerization has emerged as a revolutionary technology in the software development and deployment industry. Containers offer a portable and lightweight solution that allows for packaging applications and their dependencies…
Classification of rocks is one of the fundamental tasks in a geological study. The process requires a human expert to examine sampled thin section images under a microscope. In this study, we propose a method that uses microscope…
We present a light and fast, public available, ray-tracer {\tt Splotch} software tool which supports the effective visualization of cosmological simulations data. We describe the algorithm it relies on, which is designed in order to deal…
We present the Core Imaging Library (CIL), an open-source Python framework for tomographic imaging with particular emphasis on reconstruction of challenging datasets. Conventional filtered back-projection reconstruction tends to be…
Deep optical images are often crowded with overlapping objects. This is especially true in the cores of galaxy clusters, where images of dozens of galaxies may lie atop one another. Accurate measurements of cluster properties require…
This is a manual for the MOSiC package. MOSiC is a collection of IDL programs for profile analysis and Gaussian fitting of the Mg II h/k lines along with Gaussian fitting of the C II 133.5 nm line pair, the O I 135.6, the Cl I 135.2, the Si…
The article provides a brief description of the software package DECH for processing and analysis of astronomical spectra. DECH supports all stages of processing and analysis of spectral data, including image preprocessing, spectra…