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In this paper we describe the main features of the software package named FITSH, intended to provide a standalone environment for analysis of data acquired by imaging astronomical detectors. The package provides utilities both for the full…

Instrumentation and Methods for Astrophysics · Physics 2015-06-03 András Pál

We present MASSCLEAN, a new, sophisticated and robust stellar cluster image and photometry simulation package. This visualization tool is able to create color-magnitude diagrams and standard FITS images in any of the traditional optical and…

Astrophysics · Physics 2015-05-13 Bogdan Popescu , M. M. Hanson

We present the v1.0 release of CLMM, an open source Python library for the estimation of the weak lensing masses of clusters of galaxies. CLMM is designed as a standalone toolkit of building blocks to enable end-to-end analysis pipeline…

PCrystalX-Web is a web application developed to be easy and fast to use. The purpose of the software is that researchers from any area are able to use two methods to analyze an X-ray diffraction pattern more straightforwardly. With the full…

Materials Science · Physics 2022-05-02 Pablo L Bernardo

We describe a computer application designed to analyze hyperspectral data collected by the Compact Infrared Spectrometer for Mars (CRISM). The application links the spectral, imaging and mapping perspectives on the eventual CRISM dataset by…

Instrumentation and Methods for Astrophysics · Physics 2014-01-29 Adrian J. Brown , Michael Storrie-Lombardi

Siril is a powerful open-source software package designed for the preprocessing and post-processing of astronomical images. It is particularly well-suited for astrophotography enthusiasts and professional astronomers alike. Siril provides…

Instrumentation and Methods for Astrophysics · Physics 2024-10-17 Cyril Richard , Vincent Hourdin , Cécile Melis , Adrian Knagg-Baugh

Thin-layer chromatography (TLC) is a crucial technique in molecular polarity analysis. Despite its importance, the interpretability of predictive models for TLC, especially those driven by artificial intelligence, remains a challenge.…

Machine Learning · Computer Science 2024-01-26 Siyu Lou , Chengchun Liu , Yuntian Chen , Fanyang Mo

Grazing incidence X-ray diffraction (GIXD) is widely used for the structural characterization of thin films, particularly for analyzing phase composition and the orientation distribution of crystallites. While various tools exist for…

We present ktrain, a low-code Python library that makes machine learning more accessible and easier to apply. As a wrapper to TensorFlow and many other libraries (e.g., transformers, scikit-learn, stellargraph), it is designed to make…

Machine Learning · Computer Science 2022-04-07 Arun S. Maiya

Digitized Histological diagnosis is in increasing demand. However, color variations due to various factors are imposing obstacles to the diagnosis process. The problem of stain color variations is a well-defined problem with many proposed…

Computer Vision and Pattern Recognition · Computer Science 2018-04-06 M Tarek Shaban , Christoph Baur , Nassir Navab , Shadi Albarqouni

Image Quality Assessment (IQA) is important for scientific inquiry, especially in medical imaging and machine learning. Potential data quality issues can be exacerbated when human-based workflows use limited views of the data that may…

Computer Vision and Pattern Recognition · Computer Science 2021-07-28 Riqiang Gao , Mirza S. Khan , Yucheng Tang , Kaiwen Xu , Steve Deppen , Yuankai Huo , Kim L. Sandler , Pierre P. Massion , Bennett A. Landman

Due to the instrument's non-trivial resolution function, measurements on triple-axis spectrometers require extra care from the experimenter in order to obtain optimal results and to avoid unwanted spurious artefacts. We present a free and…

Instrumentation and Detectors · Physics 2021-02-17 T. Weber , R. Georgii , P. Böni

Crystallization is a key step in macromolecular structure determination by crystallography. While a robust theoretical treatment of the process is available, due to the complexity of the system, the experimental process is still largely one…

Biomolecules · Quantitative Biology 2016-08-02 Irem Altan , Patrick Charbonneau , Edward H. Snell

We present ChromoSkein, a web-based tool for visualizing three-dimensional chromatin models. The spatial organization of chromatin is essential to its function. Experimental methods, namely Hi-C, reveal the spatial conformation but output a…

Human-Computer Interaction · Computer Science 2022-11-11 Matúš Talčík , Filip Opálený , Tereza Clarence , Katarína Furmanová , Jan Byška , Barbora Kozlíková , David Kouřil

CMasher is a Python package that provides a curated collection of scientific colormaps, showcased in the online documentation (https://cmasher.readthedocs.io). The colormaps in CMasher are all designed to be perceptually uniform sequential…

Image and Video Processing · Electrical Eng. & Systems 2020-03-03 Ellert van der Velden

We introduce the Contour Analysis Tool (CAT), a Python toolkit aimed at identifying and analyzing structural elements in density maps. CAT employs various contouring techniques, including the lowest-closed contour (LCC), linear and…

Instrumentation and Methods for Astrophysics · Physics 2024-09-11 Mark A. Hutchison , Christine M. Koepferl

Gamma-Ray Infrastructure For Fundamental Investigations of Nuclei, GRIFFIN, is a new experimental facility for radioactive decay studies at the TRIUMF-ISAC laboratory. This article describes the details of the custom designed GRIFFIN…

The CRISTAL (Cooperating Repositories and an Information System for Tracking Assembly Lifecycles) project is delivering a software system to facilitate the management of the engineering data collected at each stage of production of CMS.…

Empirical research on code review processes is increasingly central to understanding software quality and collaboration. However, collecting and analyzing review data remains a time-consuming and technically intensive task. Most researchers…

Software Engineering · Computer Science 2025-10-07 Samah Kansab , Francis Bordeleau , Ali Tizghadam

Computed tomography (CT) is increasingly being used for cancer screening, such as early detection of lung cancer. However, CT studies have varying pixel spacing due to differences in acquisition parameters. Thick slice CTs have lower…

Computer Vision and Pattern Recognition · Computer Science 2018-07-19 Meng Li , Shiwen Shen , Wen Gao , William Hsu , Jason Cong
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