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Dynamic gene-regulatory networks are complex since the number of potential components involved in the system is very large. Estimating dynamic networks is an important task because they compromise valuable information about interactions…

Methodology · Statistics 2012-05-15 Antonino Abbruzzo , Ernst Wit

One of the focus areas of modern scientific research is to reveal mysteries related to genes and their interactions. The dynamic interactions between genes can be encoded into a gene regulatory network (GRN), which can be used to gain…

Optimization and Control · Mathematics 2020-07-16 Atte Aalto , Lauri Viitasaari , Pauliina Ilmonen , Laurent Mombaerts , Jorge Goncalves

Causal representation learning seeks to uncover causal relationships among high-level latent variables from low-level, entangled, and noisy observations. Existing approaches often either rely on deep neural networks, which lack…

Methodology · Statistics 2026-03-27 Wenjin Zhang , Yixin Wang , Yuqi Gu

Deep learning techniques have shown promise in many domain applications. This paper proposes a novel deep reservoir computing framework, termed deep recurrent stochastic configuration network (DeepRSCN) for modelling nonlinear dynamic…

Machine Learning · Computer Science 2024-10-29 Gang Dang , Dianhui Wang

We propose a probabilistic framework for developing computational models of biological neural systems. In this framework, physiological recordings are viewed as discrete-time partial observations of an underlying continuous-time stochastic…

Neurons and Cognition · Quantitative Biology 2026-02-10 Ahmed ElGazzar , Marcel van Gerven

We propose a new encoder-decoder approach to learn distributed sentence representations that are applicable to multiple purposes. The model is learned by using a convolutional neural network as an encoder to map an input sentence into a…

Computation and Language · Computer Science 2017-07-28 Zhe Gan , Yunchen Pu , Ricardo Henao , Chunyuan Li , Xiaodong He , Lawrence Carin

In traditional software programs, it is easy to trace program logic from variables back to input, apply assertion statements to block erroneous behavior, and compose programs together. Although deep learning programs have demonstrated…

Machine Learning · Computer Science 2021-10-27 Mike Wu , Noah Goodman , Stefano Ermon

The lexicase parent selection method selects parents by considering performance on individual data points in random order instead of using a fitness function based on an aggregated data accuracy. While the method has demonstrated promise in…

Neural and Evolutionary Computing · Computer Science 2019-07-11 Sneha Aenugu , Lee Spector

We introduce a class of auto-encoder neural networks tailored to data from the natural exponential family (e.g., count data). The architectures are inspired by the problem of learning the filters in a convolutional generative model with…

Machine Learning · Computer Science 2020-06-30 Bahareh Tolooshams , Andrew H. Song , Simona Temereanca , Demba Ba

We introduce the use of high order automatic differentiation, implemented via the algebra of truncated Taylor polynomials, in genetic programming. Using the Cartesian Genetic Programming encoding we obtain a high-order Taylor representation…

Neural and Evolutionary Computing · Computer Science 2016-11-16 Dario Izzo , Francesco Biscani , Alessio Mereta

Differentiable programming is the combination of classical neural networks modules with algorithmic ones in an end-to-end differentiable model. These new models, that use automatic differentiation to calculate gradients, have new learning…

Dynamical Systems · Mathematics 2020-05-05 Adrián Hernández , José M. Amigó

This paper deals with differentiable dynamical models congruent with neural process theories that cast brain function as the hierarchical refinement of an internal generative model explaining observations. Our work extends existing…

Machine Learning · Computer Science 2021-12-10 André Ofner , Sebastian Stober

Autoencoders are data-specific compression algorithms learned automatically from examples. The predominant approach has been to construct single large global models that cover the domain. However, training and evaluating models of…

Neural and Evolutionary Computing · Computer Science 2022-12-05 Richard J. Preen , Stewart W. Wilson , Larry Bull

Complex systems in science and engineering sometimes exhibit behavior that changes across different regimes. Traditional global models struggle to capture the full range of this complex behavior, limiting their ability to accurately…

Machine Learning · Computer Science 2023-07-24 Okezzi F. Ukorigho , Opeoluwa Owoyele

Recently there has been substantial interest in spectral methods for learning dynamical systems. These methods are popular since they often offer a good tradeoff between computational and statistical efficiency. Unfortunately, they can be…

Machine Learning · Statistics 2015-11-05 Ahmed Hefny , Carlton Downey , Geoffrey Gordon

This paper presents tailor-made neural model structures and two custom fitting criteria for learning dynamical systems. The proposed framework is based on a representation of the system behavior in terms of continuous-time state-space…

Systems and Control · Electrical Eng. & Systems 2021-09-02 Marco Forgione , Dario Piga

Learning continuous-time stochastic dynamics is a fundamental and essential problem in modeling sporadic time series, whose observations are irregular and sparse in both time and dimension. For a given system whose latent states and…

Machine Learning · Computer Science 2021-04-30 Yingru Liu , Yucheng Xing , Xuewen Yang , Xin Wang , Jing Shi , Di Jin , Zhaoyue Chen

A Boolean network is a discrete dynamical system operating on vectors of Boolean variables. The action of a Boolean network can be conveniently expressed as a system of Boolean update functions, computing the new values for each component…

Formal Languages and Automata Theory · Computer Science 2023-03-02 Artiom Alhazov , Vincent Ferrari-Dominguez , Rudolf Freund , Nicolas Glade , Sergiu Ivanov

The quality of data representation in deep learning methods is directly related to the prior model imposed on the representations; however, generally used fixed priors are not capable of adjusting to the context in the data. To address this…

Machine Learning · Computer Science 2013-03-18 Rakesh Chalasani , Jose C. Principe

Learning classifier systems (LCSs) originated from cognitive-science research but migrated such that LCS became powerful classification techniques. Modern LCSs can be used to extract building blocks of knowledge to solve more difficult…

Neural and Evolutionary Computing · Computer Science 2020-06-03 Isidro M. Alvarez , Trung B. Nguyen , Will N. Browne , Mengjie Zhang