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Brain network is remarkably cost-efficient while the fundamental physical and dynamical mechanisms underlying its economical optimization in network structure and activity are not clear. Here we study intricate cost-efficient interplay…

Biological Physics · Physics 2021-06-21 Junhao Liang , Sheng-Jun Wang , Changsong Zhou

Human dynamical social networks encode information and are highly adaptive. To characterize the information encoded in the fast dynamics of social interactions, here we introduce the entropy of dynamical social networks. By analysing a…

Physics and Society · Physics 2012-01-17 Kun Zhao , Márton Karsai , Ginestra Bianconi

We present a general holistic theory for the organization of complex networks, both human-engineered and naturally-evolved. Introducing concepts of value of interactions and satisfaction as generic network performance measures, we show that…

Adaptation and Self-Organizing Systems · Physics 2007-07-13 Venkat Venkatasubramanian , Dimitris N. Politis , Priyan R. Patkar

With a view to connecting random mutation on the molecular level to punctuated equilibrium behavior on the phenotype level, we propose a new model for biological evolution, which incorporates random mutation and natural selection. In this…

Condensed Matter · Physics 2009-10-28 M. Y. Choi , H. Y. Lee , D. Kim , S. H. Park

In the brain, fine-scale correlations combine to produce macroscopic patterns of activity. However, as experiments record from larger and larger populations, we approach a fundamental bottleneck: the number of correlations one would like to…

Biological Physics · Physics 2024-02-02 Christopher W. Lynn , Qiwei Yu , Rich Pang , Stephanie E. Palmer , William Bialek

This paper mainly discusses the diffusion on complex networks with time-varying couplings. We propose a model to describe the adaptive diffusion process of local topological and dynamical information, and find that the Barabasi-Albert…

Physics and Society · Physics 2018-12-11 Ruiwu Niu , Xiaoqun Wu , Ju-an Lu , Jinhu Lv

Discriminating between correct and incorrect substrates is a core process in biology but how is energy apportioned between the conflicting demands of accuracy ($\mu$), speed ($\sigma$) and total entropy production rate ($P$)? Previous…

Molecular Networks · Quantitative Biology 2019-06-18 Felix Wong , Ariel Amir , Jeremy Gunawardena

Recent advances in experimental techniques enable the simultaneous recording of activity from thousands of neurons in the brain, presenting both an opportunity and a challenge: to build meaningful, scalable models of large neural…

Biological Physics · Physics 2025-08-05 Luca Di Carlo , Francesca Mignacco , Christopher W. Lynn , William Bialek

Two cellular automata models with directed mass flow and internal time scales are studied by numerical simulations. Relaxation rules are a combination of probabilistic critical height (probability of toppling $p$) and deterministic critical…

Statistical Mechanics · Physics 2009-10-31 Bosiljka Tadic

When a simple excitable system is continuously stimulated by a Poissonian external source, the response function (mean activity versus stimulus rate) generally shows a linear saturating shape. This is experimentally verified in some classes…

Neurons and Cognition · Quantitative Biology 2007-05-23 Mauro Copelli , Paulo R. A. Campos

The maximum entropy ansatz, as it is often invoked in the context of time-series analysis, suggests the selection of a power spectrum which is consistent with autocorrelation data and corresponds to a random process least predictable from…

Probability · Mathematics 2008-07-19 Tryphon T. Georgiou

We address the interaction-time optimization for frequency estimation in a two-level system. The goal is to estimate with maximum precision a stochastic perturbation. Our approach is valid for any figure of merit used to define optimality,…

Mesoscale and Nanoscale Physics · Physics 2021-02-17 Angel Gutierrez-Rubio , Peter Stano , Daniel Loss

Power-law-shaped avalanche-size distributions are widely used to probe for critical behavior in many different systems, particularly in neural networks. The definition of avalanche is ambiguous. Usually, theoretical avalanches are defined…

Biological Physics · Physics 2018-05-22 Mauricio Girardi-Schappo , Marcelo H. R. Tragtenberg

A path information is defined in connection with different possible paths of irregular dynamic systems moving in its phase space between two points. On the basis of the assumption that the paths are physically differentiated by their…

Statistical Mechanics · Physics 2007-05-23 Qiuping A. Wang

We study several probability distributions relevant to the avalanche dynamics of elastic interfaces driven on a random substrate: The distribution of size, duration, lateral extension or area, as well as velocities. Results from the…

Disordered Systems and Neural Networks · Physics 2019-10-18 Alejandro B. Kolton , Pierre Le Doussal , Kay Joerg Wiese

Using probabilistic approach, the transient dynamics of sparsely connected Hopfield neural networks is studied for arbitrary degree distributions. A recursive scheme is developed to determine the time evolution of overlap parameters. As…

Disordered Systems and Neural Networks · Physics 2011-11-09 Pan Zhang , Yong Chen

The entropy of network ensembles characterizes the amount of information encoded in the network structure, and can be used to quantify network complexity, and the relevance of given structural properties observed in real network datasets…

Disordered Systems and Neural Networks · Physics 2014-06-18 Kartik Anand , Dimitri Krioukov , Ginestra Bianconi

Scale-free behavior as well as oscillations are frequently observed in the activity of many natural systems. One important example is the cortical tissues of mammalian brain where both phenomena are simultaneously observed. Rhythmic…

Disordered Systems and Neural Networks · Physics 2018-08-29 S. Amin Moosavi , Afshin Montakhab , Alireza Valizadeh

We study a neural network model of interacting stochastic discrete two--state cellular automata on a regular lattice. The system is externally tuned to a critical point which varies with the degree of stochasticity (or the effective…

Statistical Mechanics · Physics 2015-06-12 Kaustubh Manchanda , Avinash Chand Yadav , Ramakrishna Ramaswamy

Sampling considerations limit the experimental conditions under which information theoretic analyses of neurophysiological data yield reliable results. We develop a procedure for computing the full temporal entropy and information of…

Biological Physics · Physics 2009-11-06 Simon R. Schultz , Stefano Panzeri