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Precise spatial and temporal manipulation of neural activity in specific genetically defined cell populations is now possible with the advent of optogenetics. The emerging field of optogenetics consists of a set of naturally-occurring and…

Neurons and Cognition · Quantitative Biology 2012-08-15 Shinya Nakamura , Michael V. Baratta , Matthew B. Pomrenze , Samuel D. Dolzani , Donald C. Cooper

Objective: Optogenetic manipulations of excitable cells enable activating or silencing specific types of neurons. By expressing two types of exogenous proteins, a single neuron can be depolarized using light of one wavelength and…

Systems and Control · Electrical Eng. & Systems 2022-11-28 Ori Noked , Amir Levi , Shirly Someck , Ortal Amber-Vitos , Eran Stark

We introduce a non-invasive approach for optogenetic regulation in biological cells through highly scattering skull tissue using wavefront shaping. The wavefront of the incident light was systematically controlled using a spatial light…

The emerging field of optogenetics allows for optical activation or inhibition of neurons and other tissue in the nervous system. In 2005 optogenetic proteins were expressed in the nematode C. elegans for the first time. Since then, C.…

Neurons and Cognition · Quantitative Biology 2013-05-13 Steven J. Husson , Alexander Gottschalk , Andrew M. Leifer

Identification and manipulation of different GABAergic interneuron classes in the behaving animal are important to understand their role in circuit dynamics and behavior. The combination of optogenetics and large-scale neuronal recordings…

Neurons and Cognition · Quantitative Biology 2023-11-20 Lisa Roux , Eran Stark , Lucas Sjulson , György Buzsáki

Over the past decade, techniques enabling bidirectional modulation of neuronal activity with single cell precision have rapidly advanced in the form of two-photon optogenetic stimulation. Unlike conventional electrophysiological approaches…

Neurons and Cognition · Quantitative Biology 2025-09-01 Riichiro Hira , Yoshikazu Isomura

In recent years, numerous research efforts have been dedicated towards developing efficient implantable devices for brain stimulation. However, there are limitations and challenges with the current technologies. Firstly, the stimulation of…

It has been hypothesized that Gamma cortical oscillations play important roles in numerous cognitive processes and may involve psychiatric conditions including anxiety, schizophrenia, and autism. Gamma rhythms are commonly observed in many…

Neurons and Cognition · Quantitative Biology 2021-03-11 Fereshteh Arab , Sareh Rostami , Mohammad Dehghani-Habibabadi , Vahid Salari , Mir-Shahram Safari

We present a method for achieving temporally and spatially precise photoactivation of neurons without the need for genetic expression of photosensitive proteins. Our method depends upon conduction of thermal energy via absorption by a dye…

Biological Physics · Physics 2012-07-04 Benjamin Migliori , Massimiliano Di Ventra , William Kristan

In this paper, we propose a new scheme for modelling the diverse behavior of neurons. We introduce the conditional activation, in which a neurons activation function is dynamically modified by a control signal. We apply this method to…

Neural and Evolutionary Computing · Computer Science 2018-03-15 Albert Lee , Bonnie Lam , Wenyuan Li , Hochul Lee , Wei-Hao Chen , Meng-Fan Chang , Kang. -L. Wang

A feature of the brains of intelligent animals is the ability to learn to respond to an ensemble of active neuronal inputs with a behaviorally appropriate ensemble of active neuronal outputs. Previously, a hypothesis was proposed on how…

Neurons and Cognition · Quantitative Biology 2025-02-04 Marat M. Rvachev

Cell assemblies manipulation by optogenetics is pivotal to advance neuroscience and neuroengineering. In in vivo applications, photostimulation often broadly addresses a population of cells simultaneously, leading to feed-forward and to…

Neurons and Cognition · Quantitative Biology 2016-04-08 Rocco Pulizzi , Gabriele Musumeci , Chris Van Den Haute , Sebastian Van De Vijver , Veerle Baekelandt , Michele Giugliano

Optogenetics has emerged as an exciting tool for manipulating neural activity, which in turn, can modulate behavior in live organisms. However, detecting the response to the optical stimulation requires electrophysiology with physical…

This article describes the investigation of morphological variations among two set of neuronal cells, namely a control group of wild type rat cells and a group of cells of a trangenic line. Special attention is given to sigular points in…

Neurons and Cognition · Quantitative Biology 2007-05-23 Luciano da Fontoura Costa , Marconi Soares Barbosa , Andreas Schierwagen , Alan Alpar , Ulrich Gartner , Thomas Arendt

Most cortical inhibitory cell types exclusively express one of three genes, parvalbumin, somatostatin and 5HT3a. The visual responses of cortical neurons are affected not only by local cues, but also by visual context. As the inhibitory…

Neurons and Cognition · Quantitative Biology 2018-06-18 Jung H. Lee , Christof Koch , Stefan Mihalas

Objective. Long-term potentiation (LTP) is a fundamental mechanism underlying learning and memory, yet its investigation at the network level in vitro remains challenging, particularly when optogenetic stimulation is used. The objective of…

Biological Physics · Physics 2026-02-13 Matteo Dominici , Ilya Auslender , Clara Zaccaria , Yasaman Heydari , Lorenzo Pavesi

Noise plays a crucial role in the regulation of cellular and organismal function and behavior. Exploring noise's impact is key to understanding fundamental biological processes, such as gene expression, signal transduction, and the…

Molecular Networks · Quantitative Biology 2025-12-16 Chuanbo Liu , Yu Fu , Lu Lin , Elliot L. Elson , Jin Wang

To understand sensory processing in neuronal populations, it is necessary to deliver stimuli to the sensory organs of animals and record evoked population activity downstream. However, the pathways from sensory input to synaptic currents in…

Neurons and Cognition · Quantitative Biology 2013-01-16 Tatjana Tchumatchenko , Jonathan P. Newman , Ming-fai Fong , Steve M. Potter

In vitro neuronal culture is an important research platform in cellular and network neuroscience. However, neurons cultured on a homogeneous scaffold form dense, randomly connected networks and display excessively synchronized activity;…

Neurons and Cognition · Quantitative Biology 2024-05-30 Hakuba Murota , Hideaki Yamamoto , Nobuaki Monma , Shigeo Sato , Ayumi Hirano-Iwata

Retinal circuitry transforms spatiotemporal patterns of light into spiking activity of ganglion cells, which provide the sole visual input to the brain. Recent advances have led to a detailed characterization of retinal activity and…

Neurons and Cognition · Quantitative Biology 2016-05-12 Vicente Botella-Soler , Stéphane Deny , Olivier Marre , Gašper Tkačik
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