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Understanding the biological function of knots in proteins and their folding process is an open and challenging question in biology. Recent studies classify the topology and geometry of knotted proteins by analysing the distribution of a…

This paper is an introduction to the theory of virtual knots and links and it gives a list of unsolved problems in this subject.

Geometric Topology · Mathematics 2007-05-23 Roger Fenn , Louis H. Kauffman , Vassily O. Manturov

We study RNA foldings and investigate their topology using a combination of knot theory and embedded rigid vertex graphs. Knot theory has been helpful in modeling biomolecules, but classical knots place emphasis on a biomolecule's…

Geometric Topology · Mathematics 2022-07-28 Jose Ceniceros , Mohamed Elhamdadi , Josef Komissar , Hitakshi Lahrani

Quantum phases can be classified by topological invariants, which take on discrete values capturing global information about the quantum state. Over the past decades, these invariants have come to play a central role in describing matter,…

It was shown by Jim Davis that a 2-component link with Alexander polynomial one is topologically concordant to the Hopf link. In this paper, we show that there is a 2-component link with Alexander polynomial one that has unknotted…

Geometric Topology · Mathematics 2014-02-26 Jae Choon Cha , Taehee Kim , Daniel Ruberman , Saso Strle

The Alexander biquandle of a virtual knot or link is a module over a 2-variable Laurent polynomial ring which is an invariant of virtual knots and links. The elementary ideals of this module are then invariants of virtual isotopy which…

Geometric Topology · Mathematics 2013-09-30 Alissa S. Crans , Allison Henrich , Sam Nelson

In 1974, D. Rolfsen asked: If two PL links in $S^3$ are isotopic (=homotopic through embeddings), then are they PL isotopic? We prove that they are PL isotopic to another pair of links which are indistinguishable from each other by finite…

Geometric Topology · Mathematics 2025-11-25 Sergey A. Melikhov

Freedman and Krushkal showed that if the surgery conjecture and the $s$-cobordism conjecture hold for all topological 4-manifolds, then every link with pairwise zero linking numbers is topologically round handle slice. Kim, Powell, and…

Geometric Topology · Mathematics 2025-07-24 Tye Lidman , Allison N. Miller , Arunima Ray

A central question in dynamics is whether the topology of a system determines its geometry. This is known as rigidity. Under mild topological conditions rigidity holds for many classical cases, including: Kleinian groups, circle…

Dynamical Systems · Mathematics 2018-05-04 Marco Martens , Liviana Palmisano , Björn Winckler

We describe a construction procedure of infinite sets of $2$-links in closed simply connected 4-manifolds that are topologically isotopic, smoothly inequivalent and componentwise topologically unknotted. These 2-links are the first examples…

Geometric Topology · Mathematics 2025-08-13 Valentina Bais , Younes Benyahia , Oliviero Malech , Rafael Torres

Consider a knot $K$ in $S^3$ with uniformly distributed electric charge. Whilst solutions to the Laplace equation in terms of Dirichlet integrals are readily available, it is still of theoretical and physical interest to understand the…

Dynamical Systems · Mathematics 2022-08-26 Max Lipton

The forbidden moves in virtual knot theory can be used to unknot any knot, virtual or classical; however, multi-component crossings in links can still survive, resulting a fused link. Using the forbidden moves, we categorify fused links…

Geometric Topology · Mathematics 2026-05-22 Sam Nelson , Stella Shah

We give a classification of Legendrian torus links. Along the way, we give the first classification of infinite families of Legendrian links where some smooth symmetries of the link cannot be realized by Legendrian isotopies. We also give…

Geometric Topology · Mathematics 2023-06-26 Jennifer Dalton , John B. Etnyre , Lisa Traynor

Oleg Viro introduced an invariant of rigid isotopy for real algebraic knots in $RP^3$ which can be viewed as a first order Vassiliev invariant. In this paper we look at real algebraic knots of degree $d$ with the maximal possible value of…

Algebraic Geometry · Mathematics 2024-12-04 Grigory Mikhalkin , Stepan Orevkov

This paper contains linear systems of equations which can distinguish knots without knot invariants. Let $M_n$ be the topological moduli space of all n-component string links and such that a fixed projection into the plane is an immersion.…

Geometric Topology · Mathematics 2025-09-22 Thomas Fiedler , Butian Zhang

Knots and knotted fields enrich physical phenomena ranging from DNA and molecular chemistry to the vortices of fluid flows and textures of ordered media. Liquid crystals provide an ideal setting for exploring such topological phenomena…

Soft Condensed Matter · Physics 2014-02-28 Thomas Machon , Gareth P. Alexander

Fix a straight line L in Euclidean 3-space and consider the fibration of the complement of L by half-planes. A generic knot K in the complement of L has neither fiber quadrisecants nor fiber extreme secants such that K touches the…

Geometric Topology · Mathematics 2007-05-23 T. Fiedler , V. Kurlin

It is sometimes said that there may be a unique algebraic theory independent of space-time topologies which underlies superstring and p-brane theories. In this paper, I construct some algebras using knot relations within the framework of…

High Energy Physics - Theory · Physics 2008-02-03 Phil E. Gibbs

We study petal diagrams of knots, which provide a method of describing knots in terms of permutations in a symmetric group $S_{2n+1}$. We define two classes of moves on such permutations, called trivial petal additions and crossing…

Geometric Topology · Mathematics 2018-12-24 Leslie Colton , Cory Glover , Mark Hughes , Samantha Sandberg

We present two different constructions of invariants for Legendrian knots in the standard contact space $\R^3$. These invariants are defined combinatorially, in terms of certain planar projections, and are useful in distinguishing…

Geometric Topology · Mathematics 2007-05-23 Yuri Chekanov
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