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Regular vine distributions which constitute a flexible class of multivariate dependence models are discussed. Since multivariate copulae constructed through pair-copula decompositions were introduced to the statistical community, interest…

Methodology · Statistics 2012-11-26 Jeffrey Dissmann , Eike Christian Brechmann , Claudia Czado , Dorota Kurowicka

The Levy-type distributions are derived using the principle of maximum Tsallis nonextensive entropy both in the full and half spaces. The rates of convergence to the exact Levy stable distributions are determined by taking the N-fold…

Statistical Mechanics · Physics 2009-10-31 Sumiyoshi Abe , A. K. Rajagopal

Cayley's formula states that the number of labelled trees on $n$ vertices is $n^{n-2}$, and many of the current proofs involve complex structures or rigorous computation. We present a bijective proof of the formula by providing an…

Combinatorics · Mathematics 2014-09-08 Steven Hao , Andrew He , Ray Li , Scott Wu

Bayesian inference is now a leading technique for reconstructing phylogenetic trees from aligned sequence data. In this short note, we formally show that the maximum posterior tree topology provides a statistically consistent estimate of a…

Populations and Evolution · Quantitative Biology 2013-07-12 Mike Steel

The original development of Shapley values for prediction explanation relied on the assumption that the features being described were independent. If the features in reality are dependent this may lead to incorrect explanations. Hence,…

Methodology · Statistics 2021-02-15 Kjersti Aas , Thomas Nagler , Martin Jullum , Anders Løland

The Shapley Value and the Fair Proportion Index of phylogenetic trees have been frequently discussed as prioritization tools in conservation biology. Both indices rank species according to their contribution to total phylogenetic diversity,…

Populations and Evolution · Quantitative Biology 2017-07-28 Kristina Wicke , Mareike Fischer

We discuss both theoretical tools to verify gauge invariance in numerical calculations of cross sections and the consistency of approximation schemes used in realistic calculations. A finite set of Ward Identities for 4 point scattering…

High Energy Physics - Phenomenology · Physics 2007-05-23 Christian Schwinn

The Yule branching process is a classical model for the random generation of gene tree topologies in population genetics. It generates binary ranked trees -- also called "histories" -- with a finite number $n$ of leaves. We study the…

Probability · Mathematics 2022-08-10 Filippo Disanto , Michael Fuchs

The paper written in 1925 by G. Udny Yule that we celebrate in this special issue introduces several novelties and results that we recall in detail. First, we discuss Yule (1925)'s main legacies over the past century, focusing on empirical…

Populations and Evolution · Quantitative Biology 2024-09-24 Amaury Lambert

I consider ageing behaviour in two exactly solvable reaction-diffusion systems. Ageing exponents and scaling functions are determined. I discuss in particular a case in which the equality of two critical exponents, known from systems with…

Statistical Mechanics · Physics 2007-05-23 Florian Baumann

Phylogenetic trees are widely used to understand the evolutionary history of organisms. Tree shapes provide information about macroevolutionary processes. However, macroevolutionary models are unreliable for inferring the true processes…

Populations and Evolution · Quantitative Biology 2021-10-11 Albert Ch. Soewongsono , Barbara R. Holland , Małgorzata M. O'Reilly

We consider the jellium model of $N$ particles on a line confined in an external harmonic potential and with a pairwise one-dimensional Coulomb repulsion of strength $\alpha > 0$. Using a Coulomb gas method, we study the statistics of $s =…

Statistical Mechanics · Physics 2023-03-20 Ana Flack , Satya N. Majumdar , Gregory Schehr

In many scientific fields such as biology, psychology and sociology, there is an increasing interest in estimating the causal effect of a matrix exposure on an outcome. Covariate balancing is crucial in causal inference and both exact…

Methodology · Statistics 2023-03-14 Juan Chen , Yingchun Zhou

Recently there have been several attempts to provide a whole set of generators of the ideal of the algebraic variety associated to a phylogenetic tree evolving under an algebraic model. These algebraic varieties have been proven to be…

Algebraic Geometry · Mathematics 2009-12-11 Marta Casanellas , Jesus Fernandez-Sanchez

We introduce some new indexes to measure the departure of any multivariate continuous distribution on non-negative orthant from a given reference one such the uncorrelated exponential model, similar to the relative Fisher dispersion indexes…

Statistics Theory · Mathematics 2019-06-25 Célestin C. Kokonendji , Aboubacar Y. Touré , Amadou Sawadogo

We find the range of the major index on the various conjugacy classes of involutions in the symmetric group $S_n$. In addition to indicating the minimum and the maximum values, we show that except for the case of involutions without fixed…

Combinatorics · Mathematics 2023-10-12 Eli Bagno , Yisca Kares

Suppose we want to estimate a total effect with covariate adjustment in a linear structural equation model. We have a causal graph to decide what covariates to adjust for, but are uncertain about the graph. Here, we propose a testing…

Methodology · Statistics 2023-12-07 Zehao Su , Leonard Henckel

Phylogenies are commonly used to represent the evolutionary relationships between species, and often these phylogenies are equipped with edge lengths that indicate degrees of evolutionary difference. Given such a phylogeny, a popular…

Populations and Evolution · Quantitative Biology 2025-02-12 Martin Frohn , Kerry Manson

In population and evolutionary biology, hypotheses about micro-evolutionary and macro-evolutionary processes are commonly tested by comparing the shape indices of empirical evolutionary trees with those predicted by neutral models. A key…

Populations and Evolution · Quantitative Biology 2015-08-14 Taoyang Wu , Kwok Pui Choi

We provide a short combinatorial proof of Cayley's formula by means of a bijective map to an outcome space of an urn-drawing problem. Furthermore we introduce an algebraic structure on the set of labeled trees, which provides a more…

Combinatorics · Mathematics 2011-02-01 Victor N. Ermolaev , Giulio Iacobelli