English

Relevant phylogenetic invariants of evolutionary models

Algebraic Geometry 2009-12-11 v1 Populations and Evolution

Abstract

Recently there have been several attempts to provide a whole set of generators of the ideal of the algebraic variety associated to a phylogenetic tree evolving under an algebraic model. These algebraic varieties have been proven to be useful in phylogenetics. In this paper we prove that, for phylogenetic reconstruction purposes, it is enough to consider generators coming from the edges of the tree, the so-called edge invariants. This is the algebraic analogous to Buneman's Splits Equivalence Theorem. The interest of this result relies on its potential applications in phylogenetics for the widely used evolutionary models such as Jukes-Cantor, Kimura 2 and 3 parameters, and General Markov models.

Keywords

Cite

@article{arxiv.0912.1957,
  title  = {Relevant phylogenetic invariants of evolutionary models},
  author = {Marta Casanellas and Jesus Fernandez-Sanchez},
  journal= {arXiv preprint arXiv:0912.1957},
  year   = {2009}
}

Comments

31 pages, 4 figures

R2 v1 2026-06-21T14:22:07.757Z