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In classification and forecasting with tabular data, one often utilizes tree-based models. Those can be competitive with deep neural networks on tabular data and, under some conditions, explainable. The explainability depends on the depth…

Let $\T_{n}$ be the set of rooted labeled trees on $\set{0,...,n}$. A maximal decreasing subtree of a rooted labeled tree is defined by the maximal subtree from the root with all edges being decreasing. In this paper, we study a new…

We show that the class of finite rooted binary plane trees is a Ramsey class (with respect to topological embeddings that map leaves to leaves). That is, for all such trees P,H and every natural number k there exists a tree T such that for…

We consider the problem of estimating species trees from unrooted gene tree topologies in the presence of incomplete lineage sorting, a common phenomenon that creates gene tree heterogeneity in multilocus datasets. One popular class of…

The Subtree Isomorphism problem asks whether a given tree is contained in another given tree. The problem is of fundamental importance and has been studied since the 1960s. For some variants, e.g., ordered trees, near-linear time algorithms…

This paper studies the relationship between undirected (unrooted) and directed (rooted) phylogenetic networks. We describe a polynomial-time algorithm for deciding whether an undirected nonbinary phylogenetic network, given the locations of…

Neutral macroevolutionary models, such as the Yule model, give rise to a probability distribution on the set of discrete rooted binary trees over a given leaf set. Such models can provide a signal as to the approximate location of the root…

We introduce some natural families of distributions on rooted binary ranked plane trees with a view toward unifying ideas from various fields, including macroevolution, epidemiology, computational group theory, search algorithms and other…

In recent years, there has been an effort to extend the classical notion of phylogenetic balance, originally defined in the context of trees, to networks. One of the most natural ways to do this is with the so-called $B_2$ index. In this…

Rooted trees are essential for describing numerical schemes via the so-called B-series. They have also been used extensively in rough analysis for expanding solutions of singular Stochastic Partial Differential Equations (SPDEs). When one…

We consider the problem of computing the measure of a regular set of infinite binary trees. While the general case remains unsolved, we show that the measure of a language can be computed when the set is given in one of the following three…

Using uniformization, Cantor type sets can be regarded as boundaries of rooted trees. In this setting, we show that the trace of a first-order Sobolev space on the boundary of a regular rooted tree is exactly a Besov space with an explicit…

In this article we compare the known dynamical polynomial time algorithm for the game-over attack strategy, to that of the brute force approach; of checking all the ordered rooted subtrees of a given tree that represents a given computer…

Over some types of trees with a given number of vertices, which trees minimize or maximize the total number of subtrees or leaf containing subtrees are studied. Here are some of the main results:\ (1)\, Sharp upper bound on the total number…

Some data analysis problems require the computation of (regularised) inverse traces, i.e. quantities of the form $\Tr (q \bI + \bL)^{-1}$. For large matrices, direct methods are unfeasible and one must resort to approximations, for example…

As researchers collect increasingly large molecular data sets to reconstruct the Tree of Life, the heterogeneity of signals in the genomes of diverse organisms poses challenges for traditional phylogenetic analysis. A class of phylogenetic…

Exploratory data analysis is crucial for developing and understanding classification models from high-dimensional datasets. We explore the utility of a new unsupervised tree ensemble called uncharted forest for visualizing class…

A BC-tree (block-cutpoint-tree) is a tree (with at least two vertices) where the distance between any two leaves is even. Motivated from the study of the "core" of a graph, BC-trees provide an interesting class of trees. We consider…

The rank (also known as protection number or leaf-height) of a vertex in a rooted tree is the minimum distance between the vertex and any of its leaf descendants. We consider the sum of ranks over all vertices (known as the security) in…

Rooted, weighted continuum random trees are used to describe limits of sequences of random discrete trees. Formally, they are random quadruples $(\mathcal{T},d,r,p)$, where $(\mathcal{T},d)$ is a tree-like metric space, $r\in\mathcal{T}$ is…