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We study the problem of similarity detection by sequence alignment with gaps, using a recently established theoretical framework based on the morphology of alignment paths. Alignments of sequences without mutual correlations are found to…

Biological Physics · Physics 2009-09-25 Dirk Drasdo , Terence Hwa , Michael Lassig

Scaling behavior of scale-free evolving networks arising in communications, citations, collaborations, etc. areas is studied. We derive universal scaling relations describing properties of such networks and indicate limits of their…

Condensed Matter · Physics 2009-10-31 S. N. Dorogovtsev , J. F. F. Mendes

Sampling technique has become one of the recent research focuses in the graph-related fields. Most of the existing graph sampling algorithms tend to sample the high degree or low degree nodes in the complex networks because of the…

Social and Information Networks · Computer Science 2018-02-02 Junpeng Zhu , Hui Li , Mei Chen , Zhenyu Dai , Ming Zhu

We study fully synchronized (coherent) states in complex networks of chaotic oscillators, reviewing the analytical approach of determining the stability conditions for synchronizability and comparing them with numerical criteria. As an…

Disordered Systems and Neural Networks · Physics 2015-06-25 Pedro G. Lind , Jason A. C. Gallas , Hans J. Herrmann

Small world networks interpolate between fully regular and fully random topologies and simultaneously exhibit large local clustering as well as short average path length. Small world topology has therefore been suggested to support network…

Disordered Systems and Neural Networks · Physics 2015-05-19 Carsten Grabow , Steven Hill , Stefan Grosskinsky , Marc Timme

We introduce a correlated static model and investigate a percolation transition. The model is a modification of the static model and is characterized by assortative degree-degree correlation. As one varies the edge density, the network…

Statistical Mechanics · Physics 2015-05-13 Sang-Woo Kim , Jae Dong Noh

This article investigates the performance of grid computing systems whose interconnections are given by random and scale-free complex network models. Regular networks, which are common in parallel computing architectures, are also used as a…

Statistical Mechanics · Physics 2009-11-10 Luciano da Fontoura Costa , Gonzalo Travieso , Carlos Antonio Ruggiero

We study the Kuramoto model on complex networks, in which natural frequencies of phase oscillators and the vertex degrees are correlated. Using the annealed network approximation and numerical simulations we explore a special case in which…

Disordered Systems and Neural Networks · Physics 2013-03-14 B. C. Coutinho , A. V. Goltsev , S. N. Dorogovtsev , J. F. F. Mendes

We study the realizability of scale free-networks with a given degree sequence, showing that the fraction of realizable sequences undergoes two first-order transitions at the values 0 and 2 of the power-law exponent. We substantiate this…

Physics and Society · Physics 2011-11-04 Charo I. Del Genio , Thilo Gross , Kevin E. Bassler

Unlike the well-studied models of growing networks, where the dominant dynamics consist of insertions of new nodes and connections, and rewiring of existing links, we study {\em ad hoc} networks, where one also has to contend with rapid and…

Disordered Systems and Neural Networks · Physics 2009-11-10 Nima Sarshar , Vwani Roychowdhury

We show that not only preferential attachment but also preferential depletion leads to scale-free networks. The resulting degree distribution exponents is typically less than two (5/3) as opposed to the case of the growth models studied…

Physics and Society · Physics 2015-05-27 Christian M. Schneider , Lucilla de Arcangelis , Hans J. Herrmann

Many realistic networks are scale-free, with small characteristic path lengths, high clustering, and power law in their degree distribution. They can be obtained by dynamical networks in which a preferential attachment process takes place.…

Physics and Society · Physics 2017-03-13 Francesco Caravelli , Alioscia Hamma , Massimiliano Di Ventra

We consider complex clustered networks with a gradient structure, where sizes of the clusters are distributed unevenly. Such networks describe more closely actual networks in biophysical systems and in technological applications than…

Chaotic Dynamics · Physics 2015-06-26 Xingang Wang , Liang Huang , Ying-Cheng Lai , Choy Heng Lai

We describe an ensemble of growing scale-free networks in an equilibrium framework, providing insight into why the exponent of empirical scale-free networks in nature is typically robust. In an analogy to thermostatistics, to describe the…

Physics and Society · Physics 2014-06-11 João P. da Cruz , Nuno A. M. Araújo , Frank Raischel , Pedro G. Lind

Degree correlation is a crucial measure in networks, significantly impacting network topology and dynamical behavior. The degree sequence of a network is a significant characteristic, and altering network degree correlation through…

Social and Information Networks · Computer Science 2024-04-12 Shuo Zou , Bo Zhou , Qi Xuan

We investigate front propagation and synchronization transitions in dependence on the information transmission delay and coupling strength over scale-free neuronal networks with different average degrees and scaling exponents. As the…

Disordered Systems and Neural Networks · Physics 2009-08-19 Qingyun Wang , Matjaz Perc , Zhisheng Duan , Guanrong Chen

Critical behavior of the contact process is studied in annealed scale-free networks by mapping it on the random walk problem. We obtain the analytic results for the critical scaling, using the event-driven dynamics approach. These results…

Statistical Mechanics · Physics 2015-05-13 Jae Dong Noh , Hyunggyu Park

In this work we explore degree assortativity in complex networks, and extend its usual definition beyond that of nearest neighbours. We apply this definition to model networks, and describe a rewiring algorithm that induces assortativity.…

Physics and Society · Physics 2024-06-04 Pádraig MacCarron , Shane Mannion , Thierry Platini

We extend the previously observed scaling equation connecting the internode distances and nodes' degrees onto the case of weighted networks. We show that the scaling takes a similar form in the empirical data obtained from networks…

Physics and Society · Physics 2010-08-25 Julian Sienkiewicz , Janusz A. Holyst

The studies based on $A+A \rightarrow \emptyset$ and $A+B\rightarrow \emptyset$ diffusion-annihilation processes have so far been studied on weighted uncorrelated scale-free networks and fractal scale-free networks. In the previous reports,…

Disordered Systems and Neural Networks · Physics 2011-11-21 Yichao Zhang , Jihong Guan , Zhongzhi Zhang , Shi Zhou , Shuigeng Zhou