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Neural coding is a field of study that concerns how sensory information is represented in the brain by networks of neurons. The link between external stimulus and neural response can be studied from two parallel points of view. The first,…

Neurons and Cognition · Quantitative Biology 2012-03-07 Shinsuke Koyama

We take the testing perspective to understand what the minimal discrimination time between two stimuli is for different types of rate coding neurons. Our main goal is to describe the testing abilities of two different encoding systems:…

Statistics Theory · Mathematics 2024-02-14 Guilherme Ost , Patricia Reynaud-Bouret

Positive correlations in the activity of neurons are widely observed in the brain. Previous studies have shown these correlations to be detrimental to the fidelity of population codes or at best marginally favorable compared to independent…

Neurons and Cognition · Quantitative Biology 2013-07-22 Rava Azeredo da Silveira , Michael J. Berry

We propose the design of an original scalable image coder/decoder that is inspired from the mammalians retina. Our coder accounts for the time-dependent and also nondeterministic behavior of the actual retina. The present work brings two…

Computer Vision and Pattern Recognition · Computer Science 2015-03-20 Khaled Masmoudi , Marc Antonini , Pierre Kornprobst

Several theories of early sensory processing suggest that it whitens sensory stimuli. Here, we test three key predictions of the whitening theory using recordings from 152 ganglion cells in salamander retina responding to natural movies. We…

Neurons and Cognition · Quantitative Biology 2017-03-21 Reza Abbasi-Asl , Cengiz Pehlevan , Bin Yu , Dmitri B. Chklovskii

The manner in which groups of neurons represent events in the external world is fundamental to neuroscience. Here, we analyze the population code of the retina during naturalistic stimulation and show that the information conveyed by…

Neurons and Cognition · Quantitative Biology 2007-05-23 Elad Schneidman , Jason L. Puchalla , Ronen Segev , Robert A. Harris , William Bialek , Michael J. Berry

Neurons in early sensory areas rapidly adapt to changing sensory statistics, both by normalizing the variance of their individual responses and by reducing correlations between their responses. Together, these transformations may be viewed…

Neurons and Cognition · Quantitative Biology 2023-10-27 Lyndon R. Duong , Eero P. Simoncelli , Dmitri B. Chklovskii , David Lipshutz

Cellular nuclei recognition serves as a fundamental and essential step in the workflow of digital pathology. However, with disparate source organs and staining procedures among histology image clusters, the scanned tiles inherently conform…

Quantitative Methods · Quantitative Biology 2024-07-22 Jianan Fan , Dongnan Liu , Canran Li , Hang Chang , Heng Huang , Filip Braet , Mei Chen , Weidong Cai

Many neurons in the visual cortex are orientation-selective, increase their firing rate with contrast and are modulated by attention. What is the cortical circuit that underlies these computations? We examine how synchrony can be modulated…

Neurons and Cognition · Quantitative Biology 2007-05-23 Paul H. E. Tiesinga , Calin I. Buia

Cortical populations of neurons develop sparse representations adapted to the statistics of the environment. While existing synaptic plasticity models reproduce some of the observed receptive-field properties, a major obstacle is the…

Neurons and Cognition · Quantitative Biology 2022-09-16 Carlos Stein N. Brito , Wulfram Gerstner

Neural circuits are able to perform computations under very diverse conditions and requirements. The required computations impose clear constraints on their fine-tuning: a rapid and maximally informative response to stimuli in general…

Neurons and Cognition · Quantitative Biology 2019-10-22 Jens Wilting , Jonas Dehning , Joao Pinheiro Neto , Lucas Rudelt , Michael Wibral , Johannes Zierenberg , Viola Priesemann

The visual system is hierarchically organized to process visual information in successive stages. Neural representations vary drastically across the first stages of visual processing: at the output of the retina, ganglion cell receptive…

Neurons and Cognition · Quantitative Biology 2019-01-07 Jack Lindsey , Samuel A. Ocko , Surya Ganguli , Stephane Deny

Animals learn to predict external contingencies from experience through a process of conditioning. A natural mechanism for conditioning is stimulus substitution, whereby the neuronal response to a stimulus with no prior behavioral…

Neurons and Cognition · Quantitative Biology 2024-09-23 Pantelis Vafidis , Antonio Rangel

A neuron transforms its input into output spikes, and this transformation is the basic unit of computation in the nervous system. The spiking response of the neuron to a complex, time-varying input can be predicted from the detailed…

Neurons and Cognition · Quantitative Biology 2011-12-19 Michael Famulare , Adrienne Fairhall

Why do neurons encode information the way they do? Normative answers to this question model neural activity as the solution to an optimisation problem; for example, the celebrated efficient coding hypothesis frames neural activity as the…

Neurons and Cognition · Quantitative Biology 2026-03-06 William Dorrell , Peter E. Latham , James Whittington

We present a method to estimate Gibbs distributions with \textit{spatio-temporal} constraints on spike trains statistics. We apply this method to spike trains recorded from ganglion cells of the salamander retina, in response to natural…

Neurons and Cognition · Quantitative Biology 2013-01-11 J. C. Vasquez , O. Marre , A. G. Palacios , M. J. Berry , B. Cessac

Repeating spatiotemporal spike patterns exist and carry information. Here we investigated how a single spiking neuron can optimally respond to one given pattern (localist coding), or to either one of several patterns (distributed coding,…

Neural and Evolutionary Computing · Computer Science 2018-09-24 Timothée Masquelier , Saeed Reza Kheradpisheh

Statistical whitening transformations play a fundamental role in many computational systems, and may also play an important role in biological sensory systems. Existing neural circuit models of adaptive whitening operate by modifying…

Neurons and Cognition · Quantitative Biology 2025-03-03 Lyndon R. Duong , David Lipshutz , David J. Heeger , Dmitri B. Chklovskii , Eero P. Simoncelli

In many cases, the computation of a neural system can be reduced to a receptive field, or a set of linear filters, and a thresholding function, or gain curve, which determines the firing probability; this is known as a linear/nonlinear…

Neurons and Cognition · Quantitative Biology 2014-11-12 Sungho Hong , Brian N. Lundstrom , Adrienne Fairhall

Studies of human decision-making demonstrate that environmental regularities, such as natural image statistics or intentionally nonuniform stimulus probabilities, can be exploited to improve efficiency (termed `efficient-coding').…

Neurons and Cognition · Quantitative Biology 2025-09-30 Holly Kular , Robert Kim , John Serences , Nuttida Rungratsameetaweemana