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We introduce priors and algorithms to perform Bayesian inference in Gaussian models defined by acyclic directed mixed graphs. Such a class of graphs, composed of directed and bi-directed edges, is a representation of conditional…

Methodology · Statistics 2012-07-02 Ricardo Silva , Zoubin Ghahramani

Graph reordering is a powerful technique to increase the locality of the representations of graphs, which can be helpful in several applications. We study how the technique can be used to improve compression of graphs and inverted indexes.…

Data Structures and Algorithms · Computer Science 2017-09-04 Laxman Dhulipala , Igor Kabiljo , Brian Karrer , Giuseppe Ottaviano , Sergey Pupyrev , Alon Shalita

Shape-based metrics measure how faithfully a drawing D represents the structure of a graph G, using the proximity graph S of D. While some limited graph classes admit proximity drawings (i.e., optimally shape-faithful drawings, where S =…

Data Structures and Algorithms · Computer Science 2022-08-31 Amyra Meidiana , Seok-Hee Hong , Peter Eades

Learning embeddings from large-scale networks is an open challenge. Despite the overwhelming number of existing methods, is is unclear how to exploit network structure in a way that generalizes easily to unseen nodes, edges or graphs. In…

Machine Learning · Computer Science 2020-09-29 Nurudin Alvarez-Gonzalez , Andreas Kaltenbrunner , Vicenç Gómez

As the popularity of graph data increases, there is a growing need to count the occurrences of subgraph patterns of interest, for a variety of applications. Many graphs are massive in scale and also fully dynamic (with insertions and…

Databases · Computer Science 2022-11-15 Kaixin Wang , Cheng Long , Da Yan , Jie Zhang , H. V. Jagadish

Low-dimensional representations, or embeddings, of a graph's nodes facilitate several practical data science and data engineering tasks. As such embeddings rely, explicitly or implicitly, on a similarity measure among nodes, they require…

Machine Learning · Computer Science 2023-01-06 Anton Tsitsulin , Marina Munkhoeva , Davide Mottin , Panagiotis Karras , Ivan Oseledets , Emmanuel Müller

We describe algorithms for drawing media, systems of states, tokens and actions that have state transition graphs in the form of partial cubes. Our algorithms are based on two principles: embedding the state transition graph in a…

Data Structures and Algorithms · Computer Science 2007-05-23 David Eppstein

Four algorithms giving rise to graceful graphs from a known (non)graceful graph are described. Some necessary conditions for a graph to be highly graceful and critical are given. Finally some conjectures are made on graceful, critical and…

Combinatorics · Mathematics 2020-06-09 Suryaprakash Nagoji Rao

Word and graph embeddings are widely used in deep learning applications. We present a data structure that captures inherent hierarchical properties from an unordered flat embedding space, particularly a sense of direction between pairs of…

Computation and Language · Computer Science 2024-11-12 Xingzhi Guo , Steven Skiena

Locally-biased graph algorithms are algorithms that attempt to find local or small-scale structure in a large data graph. In some cases, this can be accomplished by adding some sort of locality constraint and calling a traditional graph…

Social and Information Networks · Computer Science 2016-12-06 Kimon Fountoulakis , David Gleich , Michael Mahoney

The two most popular types of graphical model are directed models (Bayesian networks) and undirected models (Markov random fields, or MRFs). Directed and undirected models offer complementary properties in model construction, expressing…

Artificial Intelligence · Computer Science 2012-12-12 Brendan J. Frey

In this paper we study problems of drawing graphs in the plane using edge length constraints and angle optimization. Specifically we consider the problem of maximizing the minimum angle, the MMA problem. We solve the MMA problem using a…

Computational Geometry · Computer Science 2013-05-22 Sergey Bereg , Timothy Rozario

The definition of $1$-planar graphs naturally extends graph planarity, namely a graph is $1$-planar if it can be drawn in the plane with at most one crossing per edge. Unfortunately, while testing graph planarity is solvable in linear time,…

Computational Geometry · Computer Science 2019-11-05 Carla Binucci , Walter Didimo , Fabrizio Montecchiani

Graph analytics can lead to better quantitative understanding and control of complex networks, but traditional methods suffer from high computational cost and excessive memory requirements associated with the high-dimensionality and…

Machine Learning · Computer Science 2020-12-16 Mengjia Xu

Constructing a spanning tree of a graph is one of the most basic tasks in graph theory. We consider a relaxed version of this problem in the setting of local algorithms. The relaxation is that the constructed subgraph is a sparse spanning…

Data Structures and Algorithms · Computer Science 2021-04-28 Reut Levi , Dana Ron , Ronitt Rubinfeld

A new approach to find all the transitive orientations for a comparability graph (finite or infinite) is presented. This approach is based on the link between the notion of ``strong'' partitive set and the forcing theory (notions of…

alg-geom · Mathematics 2008-02-03 A. Belkasri , M. Hamade

Embedding undirected graphs in a Euclidean space has many computational benefits. FastMap is an efficient embedding algorithm that facilitates a geometric interpretation of problems posed on undirected graphs. However, Euclidean distances…

Machine Learning · Computer Science 2020-06-08 Sriram Gopalakrishnan , Liron Cohen , Sven Koenig , T. K. Satish Kumar

We explore various techniques for counting the number of straight-edge crossing-free graphs that can be embedded on a planar point set. In particular, we derive a lower bound on the ratio of the number of such graphs with $m+1$ edges to the…

Combinatorics · Mathematics 2019-05-24 Siddharth Prasad

We propose the Graph Space Embedding (GSE), a technique that maps the input into a space where interactions are implicitly encoded, with little computations required. We provide theoretical results on an optimal regime for the GSE, namely a…

Machine Learning · Computer Science 2019-08-01 João Pereira , Albert Groen , Erik Stroes , Evgeni Levin

This work introduces a novel algorithm for finding the connected components of a graph where the vertices and edges are grouped into sets defining a Set--Based Graph. The algorithm, under certain restrictions on those sets, has the…

Data Structures and Algorithms · Computer Science 2020-11-30 Ernesto Kofman , Denise Marzorati , Joaquín Fernández